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View Structure Prediction Details

Protein: tre-3
Organism: Caenorhabditis elegans
Length: 588 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tre-3.

Description E-value Query
Range
Subject
Range
gi|13548689 - gi|13548689|dbj|BAB40812.1| trehalase [Artemia franciscana]
453.0 [0..5] [586..5]

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Predicted Domain #1
Region A:
Residues: [1-588]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNPWNFFVF VLFIICGPLG SNQVEVHVCD TTNSNNSFIY CNGPILDAVN YHSLYNDSKE  60
   61 FVDMPLKDDP QIVYNAWRAK YGNQSSANLN KSDVQAFVNQ YFSAAGTELV VCTPDDWQEK 120
  121 PPKLATIADP KLPIEQHTSR YSLLYVPNSF IVPGGRFREF YYWDAYWIIK GLIASDMYNT 180
  181 TRSMIRNLAS MVDKYGFVPN GGRVYYLQRS QPPFLAAMVY ELYEATNDKA FVAELLPTLL 240
  241 KELNFWNEKR MTDVQMNGKS FKVYQYKTAS NVPRPESYRV DTQNSAKLAN GADQQQFYQD 300
  301 LASAAESGWD FSTRWFSDYK TLTSIETTKV LPVDLNGLLC WNMDIMEYLY EQIGDTKNSQ 360
  361 IFRNKRADFR DTVQNVFYNR TDGTWYDYNL RTQSHNPRFY TSTAVPLFTN CYNTLNTGKS 420
  421 QKVFDYMDKM GVFTYPGGIP TSMSQESDQQ WDFPNGWSPN NHMIIEGLRK SANPEMQDKG 480
  481 FLIASKWVMG NFRVFYETGH MWEKYNVIGS YPQPGSGGEY DVQDGFGWSN GAILDLLLTY 540
  541 NDRLFVPENF VNTTVTPSVE STTKSAPKYA KLPWVLVFAF MIRQLFNY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 105.0
Match: 2jf4A
Description: No description for 2jf4A was found.

Predicted functions:

Term Confidence Notes
trehalase activity 8.21995956919006 bayes_pls_golite062009
alpha,alpha-trehalase activity 8.15034892377685 bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds 2.91663376644963 bayes_pls_golite062009
hydrolase activity 1.70627242352696 bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds 1.61226907827219 bayes_pls_golite062009
catalytic activity 1.16285856935495 bayes_pls_golite062009
binding 0.614457867010069 bayes_pls_golite062009
protein binding 0.31260719357226 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle