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View Structure Prediction Details

Protein: inx-11
Organism: Caenorhabditis elegans
Length: 465 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for inx-11.

Description E-value Query
Range
Subject
Range
gi|157762336 - gi|157762336|ref|XP_001673510.1| Hypothetical protein CBG23507 [Caenorhabditis briggsae AF16]
gi|39592277, gi|... - gi|39592277|emb|CAE75498.1| Hypothetical protein CBG23507 [Caenorhabditis briggsae], gi|187020954|em...
492.0 [0..1] [465..1]

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Predicted Domain #1
Region A:
Residues: [1-128]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMIETFLGM AKYLSPREDD DWSDRLNYLM TPNILLAFSV LISFKQFGGR PIECMFPNKF  60
   61 PGSWEQYAEN YCWSQDTYFV EPTQDVSLLK KEERYTPDRQ LSYYQWVPFF LLLQAAFFRA 120
  121 PSYLWKYF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [129-209]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNHSGIRIHE VVEKAKDSAN VEEEVREKNI LILKRHLSSA LRFQANMERK KVQVHKTVTF  60
   61 LNFQYSSGFI SWIYLFTKVL Y

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [210-393]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FLNVFAQLYL MNYFLGTNRH HWYGFGVVQD IVQGEPWERS GYFPRAAVCD FEVRQVANIQ  60
   61 RYSVQCVLVI NIFNEKIFVL LWFWYVILLL SSTVSLVQWF IVLVFPCFSK WFVKQHLALS 120
  121 TLQNFNQRNS RREDSDVSKF VTQYLHKDGV FVLRMVSSHA GIIFATDLVQ ALYEAYDFQD 180
  181 KNKD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [394-465]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VQGSPVSDDL QTISTGAESS IRQRKTRKGS RIEYKAGFPI STSLMPDKDD IESSSTSSEE  60
   61 DQKRVSNVIT NI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle