YRC Public Data Repository - Protein Structure Prediction

Protein:	CE06529
Organism:	Caenorhabditis elegans
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE06529.

Description	E-value	Query Range	Subject Range
ADPPT_MOUSE - L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase OS=Mus musculus GN=Aasdhpp...	214.0	[0..3]	[250..17]
gi\|157762328 - gi\|157762328\|ref\|XP_001673506.1\| Hypothetical protein CBG23511 [Caenorhabditis briggsae AF16] gi\|187020950, gi... - gi\|39592281\|emb\|CAE75502.1\| Hypothetical protein CBG23511 [Caenorhabditis briggsae], gi\|187020950\|em...	214.0	[0..1]	[276..1]
gi\|109484158 - gi\|109484158\|ref\|XP_001070860.1\| PREDICTED: similar to L-aminoadipate-semialdehyde dehydrogenase-pho...	208.0	[0..3]	[250..80]
gi\|82408245, gi\|... - gi\|82408245\|pdb\|2C43\|A Chain A, Structure Of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopanteth...	207.0	[0..3]	[250..27]
gi\|76662301 - gi\|76662301\|ref\|XP_869172.1\| PREDICTED: aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl ...	207.0	[0..3]	[250..17]
ADPPT_PONPY - L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase - Pongo pygmaeus (Oranguta... ADPPT_PONAB - L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase OS=Pongo abelii GN=AASDHPP...	207.0	[0..3]	[250..17]

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Predicted Domain #1

Region A:
Residues: [1-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLRWAISLE ETITSSTFQN MFRRAILCAS ESDVEQQRRF RYKEDALACL IGRLIPRKAA  60
   61 TISISRQWSD LEFSRNENGK PSLIQNKSDY SRQNFEYNVS HHGDLVVLAT GDTRIGVDVM 120
  121 RVNEARRETA SEQMNTLKRH FSENEIEMVK GGDKCELKRW HAFYRIWCLK ESILKATGVG 180
  181 LPDGLHNHTF QVDSSYDHAS GHSTVSTQYY HRLIPQPQWI FEESFIGENH CVAVASEVSP 240
  241 STTSCAIPFQ MMSLEEILQD ADFINITADI VKKKEKQTDE DSTPGNGIKL LNEMSKSNF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.69897
Match:	2bydA
Description:	Structure of aminoadipate-semialdehyde dehydrogenase- phosphopantetheinyl transferase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits