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View Structure Prediction Details

Protein: CE06525
Organism: Caenorhabditis elegans
Length: 490 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE06525.

Description E-value Query
Range
Subject
Range
h0012206 - null
gi|104487297 - gi|104487297|ref|NP_570924.2| protein tyrosine phosphatase, receptor type, sigma isoform 2 precursor...
456.0 [0..3] [465..1311]

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Predicted Domain #1
Region A:
Residues: [1-490]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNENDGKNSA EKHNNSQDEG SIQPDKTQLD DVADDAEKKS EKSSNCMIWS QNVLKKAKIS  60
   61 NMTREFRNNK EYKPNVTTSI SEKMMDKNRY RHIFCGDDNR VVLKERDPSN DYIHASWMVM 120
  121 PDGFQFISTQ GPIKNTIADF WHMVYTEKCH VIVMLCQYIE EDQEKCQRYF SDTSEKEYGD 180
  181 YRVKVVEKTV ELWNPVKVTG IQVQKKNCPT KHMVYHYFYY DWHDQVAPLD PAPMIKMYKA 240
  241 VLNKSSSKPI VVHCSAGVGR TSTFVGIYLS QIMIRENSSV DMVEILKRLR TMRLGAVQSQ 300
  301 LQYVYLVVLM IELFIDDKII KRNANYESLL KKYADVTRKV TAAIMEEEEK RRQRKKREEE 360
  361 KEKEQEKESP ATKEEKKKEN GLKTNRQRDN REAPSKPPRK NPEELARSKL QGPRKLTLKN 420
  421 RDGNAEEPTA KDNEERSTAE DKSKNRQKSV YVKMPLSSKE KGSKHERAKQ GARKNAARKA 480
  481 KKKPSVTGNY 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 116.0
Match: 2fh7A
Description: Crystal structure of the phosphatase domains of human PTP SIGMA
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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