YRC Public Data Repository - Protein Structure Prediction

Protein:	bir-1
Organism:	Caenorhabditis elegans
Length:	155 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for bir-1.

Description	E-value	Query Range	Subject Range
gi\|123992802, gi... - gi\|123999586\|gb\|ABM87337.1\| baculoviral IAP repeat-containing 7 (livin) [synthetic construct], gi\|12... gi\|15680241 - gi\|15680241\|gb\|AAH14475.1\| Baculoviral IAP repeat-containing 7 [Homo sapiens] HGNC:13702\|MIM:6... - IAP repeat-containing 7	146.0	[0..9]	[154..79]
gi\|94367836, gi\|... - gi\|94369130\|ref\|XP_995497.1\| PREDICTED: similar to livin inhibitor of apoptosis isoform beta [Mus mu...	145.0	[0..9]	[154..154]
gi\|114640057, gi... - gi\|114640061\|ref\|XP_001151965.1\| PREDICTED: similar to MIHC isoform 2 [Pan troglodytes], gi\|11464005...	144.0	[0..11]	[144..249]
gi\|109091329 - gi\|109091329\|ref\|XP_001085899.1\| PREDICTED: similar to livin inhibitor of apoptosis isoform beta [Ma...	142.0	[0..1]	[154..74]
gi\|187021129, gi... - gi\|39592102\|emb\|CAE75322.1\| Hypothetical protein CBG23296 [Caenorhabditis briggsae], gi\|187021129\|em... gi\|157762686 - gi\|157762686\|ref\|XP_001673685.1\| Hypothetical protein CBG23296 [Caenorhabditis briggsae AF16]	141.0	[0..5]	[155..9]
gi\|109471508 - gi\|109471508\|ref\|XP_001058257.1\| PREDICTED: similar to livin inhibitor of apoptosis isoform beta [Ra...	141.0	[0..9]	[154..71]
gi\|84579227 - gi\|84579227\|dbj\|BAE73047.1\| hypothetical protein [Macaca fascicularis]	141.0	[0..11]	[144..27]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPGTKKKSD MAKFTFYKDR LMTFKNFEYD RDPDAKCTSQ AVAQAGFYCT GPQSGKCAFC  60
   61 NKELDFDPED DPWYEHTKRD EPCEFVRIGK LDDSELTIND TVRLSQTAMI MTKLFEHEMM 120
  121 INNLSNHSSS DALFDQLKKV PNTASTTKSN SRRGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.522879
Match:	2opzA
Description:	No description for 2opzA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits