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View Structure Prediction Details

Protein: CE06487
Organism: Caenorhabditis elegans
Length: 98 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE06487.

Description E-value Query
Range
Subject
Range
gi|39594936, gi|... - gi|39594936|emb|CAE70804.1| Hypothetical protein CBG17565 [Caenorhabditis briggsae], gi|187025717|em...
gi|157768604 - gi|157768604|ref|XP_001676123.1| Hypothetical protein CBG17565 [Caenorhabditis briggsae AF16]
163.0 [0..1] [92..1]

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Predicted Domain #1
Region A:
Residues: [1-98]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVAPLLEEV MDLRRKIHII NAEQFLKTRN EHTTLILQVE AMITEFSLHV FKEHFEAIRR  60
   61 KGAYCSVRGE RNFVRYSKTL TELNSSLRHM IASFHGNN

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Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.981 a.7.12 Description not found.
View Download 0.968 a.47.2 t-snare proteins
View Download 0.967 a.7.1 Spectrin repeat
View Download 0.956 a.121.1 Tetracyclin repressor-like, C-terminal domain
View Download 0.947 a.7.1 Spectrin repeat
View Download 0.941 a.7.1 Spectrin repeat
View Download 0.941 a.7.1 Spectrin repeat
View Download 0.820 a.7.1 Spectrin repeat
View Download 0.810 a.2.11 Fe,Mn superoxide dismutase (SOD), N-terminal domain
View Download 0.748 a.2.6 Effector domain of the protein kinase pkn/prk1


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