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View Structure Prediction Details

Protein: CE06453
Organism: Caenorhabditis elegans
Length: 544 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE06453.

Description E-value Query
Range
Subject
Range
PIGS_RAT - GPI transamidase component PIG-S OS=Rattus norvegicus GN=Pigs PE=2 SV=3
559.0 [0..44] [538..15]

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Predicted Domain #1
Region A:
Residues: [1-180]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQESSKSFK QKALDFLLGR QTETEEYGEI TQSFINYVHS ERPYKLAASL SFVILVFFIG  60
   61 MPMWHFTTST YRSNFPTFPS NQSITVPIRV IFVITSEDLR NDVKTLMNEL EVNMTKKEVV 120
  121 APLDFTWTTQ FIGLRSFEHL EQDHSIQIEE NKEFFDVFVA LVPEKEWTHY SATRIQLGIG 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [181-413]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KWNFIQWPTK SEEKQKASTR VTDLVSETLI DVPHLNSIVR RDLRQKMQPW QIAALPLSHQ  60
   61 KRLVWDSAPL ATNYHIQVIH LHENSEITPE SLKEQEKTAR ALRKFAEKVK EITNVEVSFE 120
  121 HLWDFEPTRG FLIKDVQERW ALTHSAMEEL VKKVDSQLQT SLQHGAVLRF VVLETVEPVI 180
  181 VLDDTGEDSH GVAVASWGAV LPRNEATESR AIAAIRIQMG MDAELSHGWH RPP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [414-544]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VAICQWEVAR ARLRASVDNA MRAASAVRAL DQLAQKISNI VINDDVADRA TRAVEILNDV  60
   61 VRPGRMLDFE RLLEARRLAD SANSDHSLLA MLYFPMDQRT AVLIPLAVPI VLPICKLVYE 120
  121 IAKITVFWGY L

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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