YRC Public Data Repository - Protein Structure Prediction

Protein:	CE06420
Organism:	Caenorhabditis elegans
Length:	155 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE06420.

Description	E-value	Query Range	Subject Range
gi\|57012932 - gi\|57012932\|sp\|Q22398.2\|NAS22_CAEEL RecName: Full=Zinc metalloproteinase nas-22; AltName: Full=Nemat...	208.0	[0..1]	[155..441]
gi\|187025429, gi... - gi\|39581719\|emb\|CAE71052.1\| Hypothetical protein CBG17894 [Caenorhabditis briggsae], gi\|187025429\|em...	190.0	[0..1]	[153..388]
gi\|15054372 - gi\|15054372\|gb\|AAK62032.1\| metalloprotease 1 precursor [Ancylostoma caninum]	180.0	[0..2]	[154..308]
gi\|23268453 - gi\|23268453\|gb\|AAN11401.1\| metalloprotease 1 precursor [Ancylostoma ceylanicum]	176.0	[0..2]	[154..308]
gi\|21425408 - gi\|21425408\|emb\|CAD19995.2\| metalloprotease III [Ostertagia ostertagi]	176.0	[0..2]	[154..322]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANTMGSAIV AFYDYLMINK YYECSCANNL SCKNHGYPNP SNCSQCNCPY GFGGADCSQR  60
   61 AEPGATFQAT ETWQNVTISL DAGYRYLENN QKLPQVDFIY QFLWIMAPAN KTTQIRVEKF 120
  121 VEGKCLPGCI RGGVEIKTNE DPRLTSPRLC CEETS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.39794
Match:	1nt0A
Description:	Mannose-binding protein associated serine protease 2, MASP2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.286076792172079	bayes_pls_golite062009
protein binding	0.14494900666454	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: