YRC Public Data Repository - Protein Structure Prediction

Protein:	rps-5
Organism:	Caenorhabditis elegans
Length:	210 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rps-5.

Description	E-value	Query Range	Subject Range
gi\|29825585 - gi\|29825585\|gb\|AAO92286.1\| 40S ribosomal protein S5 [Dermacentor variabilis]	292.0	[0..1]	[210..1]
gi\|109460985, gi... - gi\|109460985\|ref\|XP_001062647.1\| PREDICTED: similar to ribosomal protein S5 [Rattus norvegicus], gi\|...	287.0	[0..1]	[210..52]
gi\|40643036 - gi\|40643036\|emb\|CAD91445.1\| ribosomal protein S5 [Crassostrea gigas]	285.0	[0..1]	[210..5]
gi\|51011494 - gi\|51011494\|gb\|AAT92156.1\| 40S ribosomal protein S5 [Ixodes pacificus] gi\|67083821, gi\|... - gi\|67083821\|gb\|AAY66845.1\| 40S ribosomal protein S5 [Ixodes scapularis], gi\|241735553\|ref\|XP_0024139...	284.0	[0..1]	[210..1]
RS5_PODCA - 40S ribosomal protein S5 OS=Podocoryna carnea GN=RPS5 PE=2 SV=1	283.0	[0..1]	[210..1]
gi\|50344462 - gi\|50344462\|emb\|CAH04317.1\| S5e ribosomal protein [Timarcha balearica]	283.0	[0..1]	[210..1]
gi\|61369836 - gi\|61369836\|gb\|AAX43400.1\| ribosomal protein S5 [synthetic construct]	283.0	[0..1]	[210..1]
gi\|62083485 - gi\|62083485\|gb\|AAX62467.1\| ribosomal protein S5 isoform A [Lysiphlebus testaceipes]	282.0	[0..1]	[210..11]
gi\|74139334, gi\|... - gi\|74214786\|dbj\|BAE31228.1\| unnamed protein product [Mus musculus], gi\|74211025\|dbj\|BAE37616.1\| unna...	282.0	[0..1]	[210..1]

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Predicted Domain #1

Region A:
Residues: [1-53]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADNWGSENV VADAAPATEA PEVALFGKWS LQSVNVSDIS LVDYIPVKEK SAK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.11
Match:	1iqvA
Description:	Ribosomal protein S7
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [54-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YLPHSAGRFQ VRRFRKAACP IVERLANSLM MHGRNNGKKL MTVRIVKHAF EIIYLLTGEN  60
   61 PVQVLVNAVI NSGPREDSTR IGRAGTVRRQ AVDVAPLRRV NQAIWLLCTG AREAAFRNVK 120
  121 TIAECLADEL INAAKGSSNS YAIKKKDELE RVAKSNR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.045757
Match:	1s1hG
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits