YRC Public Data Repository - Protein Structure Prediction

Protein:	CE06297
Organism:	Caenorhabditis elegans
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE06297.

Description	E-value	Query Range	Subject Range
gi\|76624430 - gi\|76624430\|ref\|XP_592590.2\| PREDICTED: similar to riboflavin kinase [Bos taurus]	184.0	[0..1]	[130..102]
gi\|73946766 - gi\|73946766\|ref\|XP_541275.2\| PREDICTED: similar to riboflavin kinase [Canis familiaris]	181.0	[0..1]	[130..435]
gi\|7023634 - gi\|7023634\|dbj\|BAA92033.1\| unnamed protein product [Homo sapiens] gi\|18845101 - gi\|18845101\|gb\|AAL79554.1\|AF482734_1 riboflavin kinase [synthetic construct]	176.0	[0..1]	[130..8]
RFK - riboflavin kinase	175.0	[0..1]	[130..8]
gi\|23271414 - gi\|23271414\|gb\|AAH33521.1\| Rfk protein [Mus musculus]	174.0	[0..1]	[130..57]
gi\|109468486, gi... - gi\|109470376\|ref\|XP_001079189.1\| PREDICTED: similar to riboflavin kinase [Rattus norvegicus], gi\|109...	174.0	[0..1]	[130..77]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLLPYQFVG EVVRGFGRGG KELGCPTANM DGTVVNGLPE GLPVGVYFGT AKLDGKSYKM  60
   61 AMSIGWNPQY QNEKKTVELH LIDYSGSDFY GKTLSAVIIG FIREMKSFES LDELKSAIAM 120
  121 DIKVARRGSV EQGKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.0
Match:	1q9sA
Description:	Crystal structure of riboflavin kinase with ternary product complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.50114843064612	bayes_pls_golite062009
transferase activity	0.8545001376057	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.74561876417362	bayes_pls_golite062009
kinase activity	0.7211756790235	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.70842009684549	bayes_pls_golite062009
riboflavin kinase activity	0.642106611415199	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: