YRC Public Data Repository - Protein Structure Prediction

Protein:	vha-1
Organism:	Caenorhabditis elegans
Length:	169 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vha-1.

Description	E-value	Query Range	Subject Range
gi\|52789283 - gi\|52789283\|gb\|AAH83129.1\| Atp6v0c protein [Mus musculus]	178.0	[0..5]	[168..35]
gi\|109127279 - gi\|109127279\|ref\|XP_001085529.1\| PREDICTED: similar to Vacuolar ATP synthase 16 kDa proteolipid subu...	177.0	[0..37]	[168..288]
gi\|58381684, gi\|... - gi\|58381684\|ref\|XP_311406.2\| ENSANGP00000025336 [Anopheles gambiae str. PEST], gi\|55242897\|gb\|EAA070...	176.0	[0..10]	[168..34]
gi\|58261016, gi\|... - gi\|58261016\|ref\|XP_567918.1\| hydrogen ion transporter [Cryptococcus neoformans var. neoformans JEC21...	167.0	[0..5]	[168..18]
gi\|49656538, gi\|... - gi\|50424561\|ref\|XP_460869.1\| hypothetical protein DEHA0F12683g [Debaryomyces hansenii CBS767], gi\|49... gi\|49656538 - gi\|49656538\|emb\|CAG89219.1\| DEHA2F11638p [Debaryomyces hansenii]	164.0	[0..14]	[168..1]
gi\|240133937 - gi\|240133937\|gb\|EER33492.1\| vacuolar ATP synthase 16 kDa proteolipid subunit [Candida tropicalis MYA... VATL_CANTR - V-type proton ATPase 16 kDa proteolipid subunit OS=Candida tropicalis GN=VMA3 PE=3 SV=1 gi\|241953253, gi... - gi\|241953253\|ref\|XP_002419348.1\| vacuolar ATP synthase proteolipid subunit, putative [Candida dublin... orf19.5886 - CUP5 CGDID:CAL0002461 Assembly 19, Contig19-10236 (56479, 57259) CDS, translated using codon table 1... gi\|238880844 - gi\|238880844\|gb\|EEQ44482.1\| vacuolar ATP synthase 16 kDa proteolipid subunit [Candida albicans WO-1]	161.0	[0..14]	[168..1]
gi\|49067667, gi\|... - gi\|71003978\|ref\|XP_756655.1\| vacuolar ATP synthase 16 kDa proteolipid subunit [Ustilago maydis 521],...	160.0	[0..16]	[168..9]
gi\|27694747 - gi\|27694747\|gb\|AAH43805.1\| MGC64475 protein [Xenopus laevis]	159.0	[0..3]	[168..43]

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Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTDTKQIIA DALLKNEQAM YGPFFGSLGV TSAMAFAAAG SAYGTAKAGT GIASMAVARP  60
   61 DLVMKAIIPV VMAGIVAIYG LVVAVIVSGK VEPAGANYTI NNAFSQFAGG LVCGLCGLGA 120
  121 GYAIGIAGDA GVRALSQQPR MFVGMILILI FAEVLGLYGM IVALILGAT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	2bl2A
Description:	The membrane rotor of the V-type ATPase from Enterococcus hirae
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits