YRC Public Data Repository - Protein Structure Prediction

Protein:	vha-2
Organism:	Caenorhabditis elegans
Length:	161 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vha-2.

Description	E-value	Query Range	Subject Range
gi\|109127279 - gi\|109127279\|ref\|XP_001085529.1\| PREDICTED: similar to Vacuolar ATP synthase 16 kDa proteolipid subu...	177.0	[0..29]	[160..288]
gi\|52789283 - gi\|52789283\|gb\|AAH83129.1\| Atp6v0c protein [Mus musculus]	174.0	[0..11]	[160..49]
gi\|58381684, gi\|... - gi\|58381684\|ref\|XP_311406.2\| ENSANGP00000025336 [Anopheles gambiae str. PEST], gi\|55242897\|gb\|EAA070...	172.0	[0..11]	[160..43]
gi\|58261016, gi\|... - gi\|58261016\|ref\|XP_567918.1\| hydrogen ion transporter [Cryptococcus neoformans var. neoformans JEC21...	168.0	[0..2]	[161..23]
gi\|50751470 - gi\|50751470\|ref\|XP_422414.1\| PREDICTED: similar to ATPase, H+ transporting, V0 subunit B; ATPase, H+...	163.0	[0..3]	[160..183]
gi\|49656538, gi\|... - gi\|50424561\|ref\|XP_460869.1\| hypothetical protein DEHA0F12683g [Debaryomyces hansenii CBS767], gi\|49... gi\|49656538 - gi\|49656538\|emb\|CAG89219.1\| DEHA2F11638p [Debaryomyces hansenii]	162.0	[0..7]	[160..2]
gi\|27694747 - gi\|27694747\|gb\|AAH43805.1\| MGC64475 protein [Xenopus laevis]	161.0	[0..2]	[160..50]
gi\|49067667, gi\|... - gi\|71003978\|ref\|XP_756655.1\| vacuolar ATP synthase 16 kDa proteolipid subunit [Ustilago maydis 521],...	161.0	[0..3]	[160..4]

Back

Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYDLETAER AAYAPFFGYM GAASAQIFTV LGAAYGTAKS AVGICSMGVM RPELIMKSVI  60
   61 PVIMAGIIGI YGLVVAMVLK GKVTSASAGY DLNKGFAHLA AGLTCGLCGL GAGYAIGIVG 120
  121 DAGVRGTAQQ PRLFVGMILI LIFSEVLGLY GMIVALILGT S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.522879
Match:	2bl2A
Description:	The membrane rotor of the V-type ATPase from Enterococcus hirae
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits