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View Structure Prediction Details

Protein: CE06248
Organism: Caenorhabditis elegans
Length: 478 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE06248.

Description E-value Query
Range
Subject
Range
gi|89084274, gi|... - gi|89101013|ref|ZP_01173856.1| adenylosuccinate lyase [Bacillus sp. NRRL B-14911], gi|89084274|gb|EA...
441.0 [0..11] [453..1]

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Predicted Domain #1
Region A:
Residues: [1-478]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASEDKFESV LSTRYCKNSP LVSILSETNK ATLWRQLWIW LAEAEKELGL KQVTQDAIDE  60
   61 MKSNRDVFDW PFIRSEERKL KHDVMAHNHA FGKLCPTAAG IIHLGATSCF VQDNADLIAY 120
  121 RDSIDHILKR FATVIDRLAA FSLKNKEVVT VGRTHYQTAS LVTVGKRGVL WAQELLMAFQ 180
  181 SLSEFRDKMR FRGIKGATGT QDSFLTLFAG DESKVEALDE LVTKKANFSN RFLITGQTYS 240
  241 RQQDSQLVFS LSLLGAAAKK VCTDIRVLQA FGELLEPFEK DQIGSSAMPY KKNPMKSERC 300
  301 CALSRKLINA PQEALTILAD QGLERTLDDS AGRRMLIPDV LLTAEALLTT LQNIFEGLSV 360
  361 QTDNVKKIVE DEIAFLGLEK AMMMLTEEGV DRQQAHAVIR KTALEAKQLQ ATQKVDIRQT 420
  421 MADPFFDSVR DRVVGLVNNP INFTGRCVSQ TESFIAKELK PTIDKYLDKS AGNVQLDV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 94.69897
Match: 1yisA
Description: Structural genomics of Caenorhabditis elegans: adenylosuccinate lyase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle