YRC Public Data Repository - Protein Structure Prediction

Protein:	CE06242
Organism:	Caenorhabditis elegans
Length:	155 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE06242.

Description	E-value	Query Range	Subject Range
gi\|109512524, gi... - gi\|109512524\|ref\|XP_001058768.1\| PREDICTED: similar to THO complex subunit 2 (Tho2) [Rattus norvegic...	140.0	[0..1]	[117..1447]
gi\|114690070 - gi\|114690070\|ref\|XP_521250.2\| PREDICTED: THO complex 2 isoform 2 [Pan troglodytes]	134.0	[0..1]	[113..1449]
gi\|57208225, gi\|... - gi\|57209994\|emb\|CAI42864.1\| THO complex 2 [Homo sapiens], gi\|57208225\|emb\|CAI42271.1\| THO complex 2 ...	132.0	[0..1]	[117..1368]
gi\|109132159 - gi\|109132159\|ref\|XP_001086217.1\| PREDICTED: THO complex 2 [Macaca mulatta]	131.0	[0..1]	[117..1447]
gi\|74008911 - gi\|74008911\|ref\|XP_538164.2\| PREDICTED: similar to THO complex subunit 2 (Tho2) [Canis familiaris]	129.0	[0..1]	[117..1447]
gi\|76658638 - gi\|76658638\|ref\|XP_584407.2\| PREDICTED: similar to THO complex 2, partial [Bos taurus]	127.0	[0..1]	[117..1198]
gi\|40738944, gi\|... - gi\|67540870\|ref\|XP_664209.1\| hypothetical protein AN6605.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	115.0	[0..20]	[151..98]
THOC2_MOUSE - THO complex subunit 2 OS=Mus musculus GN=Thoc2 PE=1 SV=1	114.0	[0..1]	[117..1447]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRDRSRSRD RKRRSRSRSV ERRRERSRSR ERRDARKNRD EKEKRSSRSR SPRDKRDRRE  60
   61 RSRSRDRKER DRERQKKDRE PKKREKQEEI SLESLQSGAD DEAMMAAMGF GGFDTTKNKQ 120
  121 VNDNVDGCVN IKKPRRYRQY MNRKGGFNRP LDFMG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	82.013228
Match:	PF08648.3
Description:	No description for PF08648.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits