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View Structure Prediction Details

Protein: CE06233
Organism: Caenorhabditis elegans
Length: 107 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE06233.

Description E-value Query
Range
Subject
Range
gi|39592236, gi|... - gi|39592236|emb|CAE75457.1| Hypothetical protein CBG23452 [Caenorhabditis briggsae], gi|187020995|em...
gi|157762418 - gi|157762418|ref|XP_001673551.1| Hypothetical protein CBG23452 [Caenorhabditis briggsae AF16]
174.0 [0..1] [107..1]

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Predicted Domain #1
Region A:
Residues: [1-107]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPLKHPNA VVLQPPTVTI SPLIRFGRYA ALSLGVVYGF FRLRQIREYH ADIREWDHEK  60
   61 AVAAAEEAAK KKKWLAKDEM RYLMQVVNIP FEEGVKQFGV ADLYKED

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 34.508638
Match: PF05680.3
Description: No description for PF05680.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.915 N/A N/A a.4.9 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle