YRC Public Data Repository - Protein Structure Prediction

Protein:	par-5
Organism:	Caenorhabditis elegans
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for par-5.

Description	E-value	Query Range	Subject Range
gi\|109087133 - gi\|109087133\|ref\|XP_001098275.1\| PREDICTED: similar to tyrosine 3/tryptophan 5 -monooxygenase activa...	434.0	[0..4]	[245..335]
gi\|68436321 - gi\|68436321\|ref\|XP_699659.1\| PREDICTED: similar to tyrosine 3-monooxygenase/tryptophan 5-monooxygena...	429.0	[0..4]	[244..1533]
gi\|114576225 - gi\|114576225\|ref\|XP_525684.2\| PREDICTED: similar to 14.3.3 protein [Pan troglodytes]	414.0	[0..4]	[245..173]
gi\|17017334 - gi\|17017334\|gb\|AAL33624.1\|AF440230_1 protein kinase A activity reporter 1 fusion protein [synthetic ...	410.0	[0..1]	[235..230]
gi\|30354619 - gi\|30354619\|gb\|AAH51814.1\| YWHAZ protein [Homo sapiens]	406.0	[0..4]	[245..77]
gi\|76630316 - gi\|76630316\|ref\|XP_874865.1\| PREDICTED: similar to 14-3-3 protein theta (14-3-3 protein tau) (14-3-3...	393.0	[0..4]	[227..166]
gi\|157755721 - gi\|157755721\|ref\|XP_001670204.1\| Hypothetical protein CBG06174 [Caenorhabditis briggsae AF16] gi\|39593837, gi\|... - gi\|39593837\|emb\|CAE62130.1\| Hypothetical protein CBG06174 [Caenorhabditis briggsae], gi\|187034407\|em...	393.0	[0..1]	[248..1]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDTVEELVQ RAKLAEQAER YDDMAAAMKK VTEQGQELSN EERNLLSVAY KNVVGARRSS  60
   61 WRVISSIEQK TEGSEKKQQL AKEYRVKVEQ ELNDICQDVL KLLDEFLIVK AGAAESKVFY 120
  121 LKMKGDYYRY LAEVASEDRA AVVEKSQKAY QEALDIAKDK MQPTHPIRLG LALNFSVFYY 180
  181 EILNTPEHAC QLAKQAFDDA IAELDTLNED SYKDSTLIMQ LLRDNLTLWT SDVGAEDQEQ 240
  241 EGNQEAGN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	107.0
Match:	2bq0A
Description:	14-3-3 Protein Beta (Human)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits