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View Structure Prediction Details

Protein: col-129
Organism: Caenorhabditis elegans
Length: 337 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-129.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
293.0 [0..49] [336..1446]

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Predicted Domain #1
Region A:
Residues: [1-337]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTARYLVSI AAAASTFAVL ASIVSLVYLV NDVNNYYDDV TRNIENFKDD ANTVWHQMMT  60
   61 VVPQGGKQRQ VYESLFGRTK RQAAQCNCGA NSAASNCPAG PPGPPGAPGE DGDHGLVGED 120
  121 GTPGADGNLG VPLSANGCIV CPAGPPGPPG QPGQNGQRGS DGQPGQDAMG GGQGAPGPQG 180
  181 PAGDNGQPGR PGNDGRPGAP GAPGTRSVGR PGTAGSPGPQ GPPGQNGNDG QPGNDGAPGQ 240
  241 PGQPGPDGHP GQPGNAGPPG TPGAAGQPGG DAAYCPCPSR SSVVRAQAAV ARNRHVAARH 300
  301 RSVSRRKAVA ARRSKARRVV AAKHRAVAKR HRAVQKA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.09691
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle