YRC Public Data Repository - Protein Structure Prediction

Protein:	cpx-2
Organism:	Caenorhabditis elegans
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cpx-2.

Description	E-value	Query Range	Subject Range
gi\|39583159, gi\|... - gi\|39583159\|emb\|CAE61377.1\| Hypothetical protein CBG05222 [Caenorhabditis briggsae], gi\|187035087\|em... gi\|157771512 - gi\|157771512\|ref\|XP_001677576.1\| Hypothetical protein CBG05222 [Caenorhabditis briggsae AF16]	128.0	[0..1]	[87..1]
cpx-1 - status:Partially_confirmed UniProt:Q9GUM7 protein_id:AAG23387.1	101.0	[0..1]	[79..57]
gi\|56758338 - gi\|56758338\|gb\|AAW27309.1\| SJCHGC05979 protein [Schistosoma japonicum]	46.0	[0..1]	[72..60]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEADRERMRQ QIRNKYNLKK KEEAREQEIA GRIAGNRKTP EQVALETLNA EEDEGIMSAI  60
   61 NDTYEKAKST VASACSTMKN VVSLWKT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.932	a.28.3	Retrovirus capsid protein C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits