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View Structure Prediction Details

Protein: CE05988
Organism: Caenorhabditis elegans
Length: 487 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE05988.

Description E-value Query
Range
Subject
Range
gi|46107656, gi|... - gi|46107656|ref|XP_380887.1| hypothetical protein FG00711.1 [Gibberella zeae PH-1], gi|42547814|gb|E...
280.0 [0..24] [430..1460]

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Predicted Domain #1
Region A:
Residues: [1-487]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVCEHTNWRV VYLMGVFSLI QNTQYSIYLT SMFSYLKKLD ATATESQFGW IMATSSLGHC  60
   61 IGCFVLGWWN SRGRKSSPPM HCGFLLMLAS NLVYLLVDSV PSDWVAHVMM VSRLLGGFGM 120
  121 GNSSPMRTCA SFHSTHSDRS KAMASISGGR SVGTVVGPGL QLMFLPLGET GIMILPGILS 180
  181 LHSNNAPAFL GIVLTMIGFV SLIVLFEEEI AEESDKTAIA DFENQYNTVK EEYPKSDIVA 240
  241 MLICMLTRFV QNFMQISIET LAPAMLMMMY FQTRQEAVAS MATTYLTTGF IATILYVLII 300
  301 FTKLSTIVRD KIFNSLVLLL FVCHLLTTYS WQFYSDSVLD EEFSNETLTG CDDIHFTWCD 360
  361 SLTISPQWAF YIGYILSFGL FMPFINVANA TLYSKLLNPD SQGTQQSLYD ISNTTARIFA 420
  421 PIFITLIYTV YGPRRVWEFL CLLLLFTTFL WIIFDKRLVP IKPIQKQMFD NDGFEQDKLS 480
  481 KIKLVSC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.522879
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle