YRC Public Data Repository - Protein Structure Prediction

Protein:	elo-1
Organism:	Caenorhabditis elegans
Length:	288 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for elo-1.

Description	E-value	Query Range	Subject Range
gi\|73973376 - gi\|73973376\|ref\|XP_852962.1\| PREDICTED: similar to homolog of yeast long chain polyunsaturated fatty...	273.0	[0..14]	[287..175]
gi\|50744984 - gi\|50744984\|ref\|XP_426204.1\| PREDICTED: similar to fatty acid elongase 1 [Gallus gallus]	267.0	[0..15]	[286..549]
gi\|157757373 - gi\|157757373\|ref\|XP_001671030.1\| Hypothetical protein CBG20021 [Caenorhabditis briggsae AF16] gi\|187023795, gi... - gi\|39588419\|emb\|CAE72770.1\| Hypothetical protein CBG20021 [Caenorhabditis briggsae], gi\|187023795\|em...	264.0	[0..1]	[286..1]
gi\|76672739 - gi\|76672739\|ref\|XP_610522.2\| PREDICTED: similar to elongation of very long chain fatty acids (FEN1/E...	263.0	[0..7]	[287..435]
gi\|40740549, gi\|... - gi\|67902260\|ref\|XP_681386.1\| hypothetical protein AN8117.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	257.0	[0..3]	[286..8]
gi\|32413000, gi\|... - gi\|32413000\|ref\|XP_326980.1\| hypothetical protein [Neurospora crassa], gi\|28949932\|emb\|CAD70918.1\| p... gi\|85100677 - gi\|85100677\|ref\|XP_961009.1\| elongation of fatty acids protein 3 [Neurospora crassa OR74A]	256.0	[0..4]	[281..15]
gi\|114607848 - gi\|114607848\|ref\|XP_527417.2\| PREDICTED: homolog of yeast long chain polyunsaturated fatty acid elon...	256.0	[0..14]	[287..127]
gi\|70985120, gi\|... - gi\|70985120\|ref\|XP_748066.1\| fatty acid elongase (Gns1) [Aspergillus fumigatus Af293], gi\|66845694\|g... gi\|159126011 - gi\|159126011\|gb\|EDP51127.1\| fatty acid elongase (Gns1), putative [Aspergillus fumigatus A1163]	249.0	[0..4]	[287..11]
gi\|116199203, gi... - gi\|88179036\|gb\|EAQ86504.1\| hypothetical protein CHGG_07757 [Chaetomium globosum CBS 148.51], gi\|1161...	248.0	[0..5]	[282..17]
gi\|119182974, gi... - gi\|90301364\|gb\|EAS30995.1\| hypothetical protein CIMG_06474 [Coccidioides immitis RS], gi\|119182974\|r...	248.0	[0..4]	[286..11]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQHPLVQRL LDVKFDTKRF VAIATHGPKN FPDAEGRKFF ADHFDVTIQA SILYMVVVFG  60
   61 TKWFMRNRQP FQLTIPLNIW NFILAAFSIA GAVKMTPEFF GTIANK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [107-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GIVASYCKVF DFTKGENGYW VWLFMASKLF ELVDTIFLVL RKRPLMFLHW YHHILTMIYA  60
   61 WYSHPLTPGF NRYGIYLNFV VHAFMYSYYF LRSMKIRVPG FIAQAITSLQ IVQFIISCAV 120
  121 LAHLGYLMHF TNANCDFEPS VFKLAVFMDT TYLALFVNFF LQSYVLRGGK DKYKAVPKKK 180
  181 NN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits