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View Structure Prediction Details

Protein: col-121
Organism: Caenorhabditis elegans
Length: 359 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-121.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
344.0 [0..27] [358..1435]

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Predicted Domain #1
Region A:
Residues: [1-359]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVDVARLGA RLICLVSALT VGFTLITFIH ISSKIQKTEN EIIGNQSAFK AKSQVIWAEL  60
   61 METGRSLRIP RSSYGTDEKK GVLHQCSQCT RLHCPQGPIG EEGSPGNDGQ PGTPGKPGSP 120
  121 GLEGVDVDLE PQEELPCSIC PAGPQGPRGA QGERGLPGNA GRKGKSGKSG HPGQPGGIGA 180
  181 SGAKGPTGTR GTPGMKGPPG DTIIAGEGIK GPPGLQGSQG PKGPPGNSGR SSNIRGPSGK 240
  241 PGQQGGIGGT GKFGKYGEQG GIGAPGEPGL PATYCPSDCG VNTILSQFGS RAQHPESING 300
  301 EDNGAPAANT EEYNSEERIE SPAPPAPQPT TNQQQETVAA AASEQESFEE SSYRSFFGH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.39794
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle