YRC Public Data Repository - Protein Structure Prediction

Protein:	CE05961
Organism:	Caenorhabditis elegans
Length:	244 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE05961.

Description	E-value	Query Range	Subject Range
gi\|109067896 - gi\|109067896\|ref\|XP_001090393.1\| PREDICTED: laminin, beta 1 [Macaca mulatta]	231.0	[0..6]	[243..1701]
gi\|168275776 - gi\|168275776\|dbj\|BAG10608.1\| laminin subunit beta-1 precursor [synthetic construct] LAMB1 - laminin, beta 1	230.0	[0..6]	[243..1527]
gi\|76615137 - gi\|76615137\|ref\|XP_598260.2\| PREDICTED: similar to Laminin beta-1 chain precursor (Laminin B1 chain)...	229.0	[0..6]	[243..1681]
gi\|109479244 - gi\|109479244\|ref\|XP_001075963.1\| PREDICTED: similar to laminin B1 subunit 1 [Rattus norvegicus]	228.0	[0..6]	[243..1570]
gi\|114615462 - gi\|114615462\|ref\|XP_001165567.1\| PREDICTED: laminin, beta 1 isoform 3 [Pan troglodytes]	227.0	[0..6]	[243..1549]
gi\|73981721 - gi\|73981721\|ref\|XP_857044.1\| PREDICTED: similar to Laminin beta-1 chain precursor (Laminin B1 chain)...	227.0	[0..6]	[243..1395]
gi\|74181151 - gi\|74181151\|dbj\|BAE27840.1\| unnamed protein product [Mus musculus]	227.0	[0..6]	[243..1575]

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Predicted Domain #1

Region A:
Residues: [1-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTENVEYIRV LLKSSQAEVQ MLREQNEFRD DLLKMFKVKL EVNALNNLPV RRNLSVEISN  60
   61 LETKKLKTEI AFLKEELGRE GKKLTIANTV HEQLKKDLEA EKRNSMFLSE LLTFYQNGHQ 120
  121 PQLPAEDQFV DFLQTETRSV KEALKEKEEE VKRLLVDMEG KTFQNLTEKG RMEEEMNDAK 180
  181 REAQILRNEM KSLQKNMTAK ENELLGYLRD ASETHTEMQK DYKIQILELQ RRNRILERHL 240
  241 DNIQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.69897
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits