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View Structure Prediction Details

Protein: glb-18
Organism: Caenorhabditis elegans
Length: 238 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for glb-18.

Description E-value Query
Range		 Subject
Range
gi|39586180, gi|... - gi|39586180|emb|CAE66591.1| Hypothetical protein CBG11915 [Caenorhabditis briggsae], gi|187029767|em...
 179.0 [0..1] [238..1]
HBB_MELME - Hemoglobin subunit beta OS=Meles meles GN=HBB PE=1 SV=1
 176.0 [0..69] [225..2]
HBB_MELCA - Hemoglobin subunit beta OS=Mellivora capensis GN=HBB PE=1 SV=1
 175.0 [0..69] [225..2]
HBB_VULVU - Hemoglobin subunit beta OS=Vulpes vulpes GN=HBB PE=1 SV=1
 175.0 [0..69] [225..2]
HBB_MANSP - Hemoglobin subunit beta OS=Mandrillus sphinx GN=HBB PE=1 SV=1
 175.0 [0..69] [225..2]
HBB_PAPCY - Hemoglobin subunit beta OS=Papio cynocephalus GN=HBB PE=1 SV=1
 175.0 [0..69] [225..2]
HBB_MUSLU - Hemoglobin subunit beta OS=Mustela lutreola GN=HBB PE=1 SV=1
 174.0 [0..69] [225..2]
HBB_PTEBR - Hemoglobin subunit beta OS=Pteronura brasiliensis GN=HBB PE=1 SV=1
HBB_MARFO - Hemoglobin subunit beta OS=Martes foina GN=HBB PE=1 SV=1
 174.0 [0..69] [225..2]
HBB_MACSP - (P68224) Hemoglobin subunit beta (Hemoglobin beta chain) (Beta-globin)
HBB_MACFU - (P68222) Hemoglobin subunit beta (Hemoglobin beta chain) (Beta-globin)
gi|86611 - gi|86611|pir||C24693 hemoglobin beta chain - stump-tailed macaque
HBB_MACNE - (P68225) Hemoglobin subunit beta (Hemoglobin beta chain) (Beta-globin)
HBB_MACFA - (P68223) Hemoglobin subunit beta (Hemoglobin beta chain) (Beta-globin)
 174.0 [0..69] [225..2]
HBB_ARCGA - Hemoglobin subunit beta OS=Arctocephalus galapagoensis GN=HBB PE=1 SV=1
HBB_ODORO - Hemoglobin subunit beta OS=Odobenus rosmarus divergens GN=HBB PE=1 SV=1
 174.0 [0..69] [225..2]

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Predicted Domain #1
Region A:
Residues: [1-238] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLTTRPRFL FRQRSHSASS VSEKGASFST PQANRKNKVN GNRRMSDSNN VAYSNGSKKV  60
   61 FEGDIEKWEP NVYEKELLRR TWSDEFDNLY ELGSAIYCYI FDHNPNCKQL FPFISKYQGD 120
  121 EWKESKEFRS QALKFVQTLA QVVKNIYHME RTESFLYMVG QKHVKFADRG FKHEYWDIFQ 180
  181 DAMEFALEHR LSIMTDLDDN QKRDAVTVWR TLALYTTVHM RNGFIDGLKG VNRFPPLV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.154902
Match: 1a3nB
Description: Hemoglobin, beta-chain
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle