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View Structure Prediction Details

Protein: scl-1
Organism: Caenorhabditis elegans
Length: 207 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for scl-1.

Description E-value Query
Range
Subject
Range
gi|39587730, gi|... - gi|39587733|emb|CAE58671.1| Hypothetical protein CBG01844 [Caenorhabditis briggsae], gi|39587730|emb...
gi|157757513, gi... - gi|157757513|ref|XP_001671100.1| Hypothetical protein CBG01837 [Caenorhabditis briggsae AF16], gi|15...
228.0 [0..2] [206..4]
scl-12 - status:Partially_confirmed UniProt:Q9N5N3 protein_id:AAF39874.1
223.0 [0..1] [206..1]

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Predicted Domain #1
Region A:
Residues: [1-207]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYFILCLLAI GVNAQFTSTG QSSIVDAHNK LRSAIAKSTY VAKGTKKEPA TDMRKMVVDS  60
   61 TVAASAQNYA NTCPTGHSKG TGYGENLYWS WTSADVGSLD SYGEIAAAAW EKEFQDFGWK 120
  121 SNAMDTTLFN SGIGHATQMA WANTSSIGCG VKNCGRDASM RNMNKIAVVC QYSPPGNTMG 180
  181 RPIYKEGTTC SSCSGSTKCD TASGLCG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.221849
Match: 1u53A
Description: Novel X-Ray Structure of Na-ASP-2, a PR-1 protein from the nematode parasite Necator americanus and a vaccine antigen for human hookworm infection
Matching Structure (courtesy of the PDB):

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