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View Structure Prediction Details

Protein: csq-1
Organism: Caenorhabditis elegans
Length: 417 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for csq-1.

Description E-value Query
Range
Subject
Range
gi|114670980 - gi|114670980|ref|XP_001164327.1| PREDICTED: prolyl 4-hydroxylase, beta subunit isoform 5 [Pan troglo...
277.0 [0..39] [417..21]

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Predicted Domain #1
Region A:
Residues: [1-417]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTWIKLASLA LVVVLASAGI SKNEDLECMF LGYPDLEYDG FDRTEVLTEK NFNRTVFAED  60
   61 TKSVVFFNDV EEDDSELDQY ECFLQLSAQI MTKRGYNFYT VNTTKEHRLR KQEEVEKGED 120
  121 TIHVYKDGYK IEYNGVRDPE TFVSWLMDIP DDPVTIINDE HDLEEFENMD DECVRIIGYF 180
  181 EPGSVALKEF EEAAEDFMGE IEFFAVVTSK WARKVGLKRV GEVQMRRPFE EDPLFAPTSA 240
  241 DTEEEFEDWV EKNKEPVMQK LTLDNYFNLW RDPEEEERMI LAFVDEETRE GRAMKRLLDK 300
  301 IADENSEHAG TLEIILVDPD EFPLMVDVWE DMFGIDIEEG PQIGLIDISE KEGIWFDMSQ 360
  361 VNLDDPKKHS DSNFEALQSW IDQILSGSIS LDDDDDDEPE PPAPPPTPKG KKSRKEL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.0
Match: 2vafA
Description: No description for 2vafA was found.

YRC Informatics Platform - Version 3.0
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