YRC Public Data Repository - Protein Structure Prediction

Protein:	tag-290
Organism:	Caenorhabditis elegans
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tag-290.

Description	E-value	Query Range	Subject Range
gi\|50732495 - gi\|50732495\|ref\|XP_418662.1\| PREDICTED: similar to MGC68843 protein [Gallus gallus]	160.0	[0..15]	[217..167]
TFPI1_RAT - Tissue factor pathway inhibitor OS=Rattus norvegicus GN=Tfpi PE=2 SV=1	156.0	[0..18]	[211..52]
TFPI1_MACMU - Tissue factor pathway inhibitor OS=Macaca mulatta GN=TFPI PE=2 SV=1	155.0	[0..18]	[214..53]
gi\|114582125 - gi\|114582125\|ref\|XP_001162107.1\| PREDICTED: tissue factor pathway inhibitor isoform 9 [Pan troglodyt...	154.0	[0..18]	[214..53]
TFPI1_RABIT - Tissue factor pathway inhibitor OS=Oryctolagus cuniculus GN=TFPI PE=2 SV=2	153.0	[0..18]	[214..49]
gi\|115917785, gi... - gi\|115966346\|ref\|XP_001180177.1\| PREDICTED: similar to GA17283-PA [Strongylocentrotus purpuratus], g...	152.0	[0..16]	[211..173]
TFPI - tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)	152.0	[0..18]	[214..53]
gi\|55725390 - gi\|55725390\|emb\|CAH89559.1\| hypothetical protein [Pongo abelii] gi\|197099492 - gi\|197099492\|ref\|NP_001124681.1\| tissue factor pathway inhibitor (lipoprotein-associated coagulation...	152.0	[0..18]	[214..53]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFHLLVCVL LVPVFSFDCT QPKDSGNVCS GSQAERSFYF DTRMKVCQPF LYSGCGGNEN  60
   61 RFSTSKECRD ACQNKKSSST TESPDTISDD SADQSGSPNS PPFVPQGDGH DQWRKADICG 120
  121 SNYLIPNGKY ITCSPNQACP KFHSCVNGAC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.0
Match:	1bikA
Description:	X-RAY STRUCTURE OF BIKUNIN FROM THE HUMAN INTER-ALPHA-INHIBITOR COMPLEX
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [151-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CPSKDYVCSL RDDNGSFMDG VEDRPRFSWN NDVHSCTRWS YYGANGNYNN FPNFQSCMKF  60
   61 CQDSKKIDL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.154902
Match:	1co7I
Description:	Pancreatic trypsin inhibitor, BPTI
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits