YRC Public Data Repository - Protein Structure Prediction

Protein:	CE05803
Organism:	Caenorhabditis elegans
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE05803.

Description	E-value	Query Range	Subject Range
gi\|6164595 - gi\|6164595\|gb\|AAF04457.1\|AF078161_1 lacunin [Manduca sexta]	191.0	[0..2]	[219..1971]
gi\|115917785, gi... - gi\|115966346\|ref\|XP_001180177.1\| PREDICTED: similar to GA17283-PA [Strongylocentrotus purpuratus], g...	186.0	[0..2]	[218..192]
gi\|110756487 - gi\|110756487\|ref\|XP_396472.3\| PREDICTED: similar to Papilin CG33103-PB, isoform B isoform 1 [Apis me...	184.0	[0..2]	[215..1626]
gi\|22901764 - gi\|22901764\|gb\|AAN10061.1\| Kunitz-like protease inhibitor precursor [Ancylostoma caninum]	174.0	[0..2]	[220..283]
gi\|157124198, gi... - gi\|157124198\|ref\|XP_001660360.1\| papilin [Aedes aegypti], gi\|108874079\|gb\|EAT38304.1\| papilin [Aedes...	173.0	[0..2]	[215..1494]
gi\|50732495 - gi\|50732495\|ref\|XP_418662.1\| PREDICTED: similar to MGC68843 protein [Gallus gallus]	172.0	[0..38]	[219..165]
gi\|29423262 - gi\|29423262\|gb\|AAO84907.1\| extracellular matrix protein papilin 2 [Drosophila melanogaster]	169.0	[0..2]	[212..1687]

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Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYLKEIQNS STTFSRGKTK MALRLAVILS LLSFTAAQST SVDCFAARDS GNTCAENSSS  60
   61 RMFYYLPRLG TCQPFMYQGC GGNSNRFSSA QECRSACTNA QAQRDSESSD ETVQMKSACS 120
  121 ATYDTDHLTP VRCSAGANTC PQGHNCIQSF CCPTSN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	1bikA
Description:	X-RAY STRUCTURE OF BIKUNIN FROM THE HUMAN INTER-ALPHA-INHIBITOR COMPLEX
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [157-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YLCNLTYDSG KFAVGGEKSD KYFWVPKYTT CMRFSFYGTL GNANNFPNYN SCMATCGNQT  60
   61 RTSQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.0
Match:	1brbI
Description:	Pancreatic trypsin inhibitor, BPTI
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits