YRC Public Data Repository - Protein Structure Prediction

Protein:	flp-8
Organism:	Caenorhabditis elegans
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for flp-8.

Description	E-value	Query Range	Subject Range
flp-8 - status:Confirmed UniProt:Q8WQF5 protein_id:CAD21627.1	147.0	[0..1]	[124..1]
gi\|157771952 - gi\|157771952\|ref\|XP_001677796.1\| Hypothetical protein CBG07605 [Caenorhabditis briggsae AF16] gi\|39596622, gi\|... - gi\|39596622\|emb\|CAE63241.1\| Hypothetical protein CBG07605 [Caenorhabditis briggsae], gi\|187033289\|em...	140.0	[0..1]	[128..1]
gi\|13159916 - gi\|13159916\|emb\|CAC32451.1\| FMRFamide-related peptide 1, FLP1 [Globodera pallida]	103.0	[0..1]	[109..16]
Fmrf-PA - The gene FMRFamide-related is referred to in FlyBase by the symbol Dmel\Fmrf (CG2346, FBgn0000715). ... gi\|220958322, gi... - gi\|220958322\|gb\|ACL91704.1\| Fmrf-PA [synthetic construct], gi\|220949152\|gb\|ACL87119.1\| Fmrf-PA [synt...	100.0	[0..15]	[128..168]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSGVLFSIF VLAISANASC DVSALTTENE KELGLRICHL EAEMQVVQRA LQEVMQQTDV  60
   61 TLYDQEVPVM NKRKNEFIRF GKRSDGMEKR KNEFIRFGKR KNEFIRFGRS DKGLGLDDND 120
  121 VSSEFFGYTS DVFYL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits