YRC Public Data Repository - Protein Structure Prediction

Protein:	CE05727
Organism:	Caenorhabditis elegans
Length:	297 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE05727.

Description	E-value	Query Range	Subject Range
TM10A_RAT - tRNA methyltransferase 10 homolog A OS=Rattus norvegicus GN=Trmt10a PE=1 SV=1	307.0	[0..3]	[292..14]
gi\|60593005, gi\|... - gi\|60593005\|ref\|NP_780598.2\| RNA (guanine-9-) methyltransferase domain containing 2 [Mus musculus], ...	296.0	[0..2]	[291..15]
RG9MTD2 - RNA (guanine-9-) methyltransferase domain containing 2	287.0	[0..6]	[290..15]
gi\|114595335, gi... - gi\|114595339\|ref\|XP_001167367.1\| PREDICTED: RNA (guanine-9-) methyltransferase domain containing 2 i...	287.0	[0..6]	[290..15]
gi\|109075100, gi... - gi\|109075100\|ref\|XP_001107528.1\| PREDICTED: similar to RNA (guanine-9-) methyltransferase domain con...	280.0	[0..6]	[278..15]
gi\|74002269 - gi\|74002269\|ref\|XP_544994.2\| PREDICTED: similar to RNA (guanine-9-) methyltransferase domain contain...	278.0	[0..2]	[289..13]
TM10A_BOVIN - tRNA methyltransferase 10 homolog A OS=Bos taurus GN=TRMT10A PE=2 SV=1	276.0	[0..3]	[291..14]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEETIEKFE DNVEHQNQDQ PVPEGMSKKQ LRRQKYKVKW EEKKLVKRAA ERIRKKEKRA  60
   61 ALKESGDLSK LRKRKDF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.555	N/A	N/A	a.17.1	p8-MTCP1
View	Download	0.494	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain
View	Download	0.476	N/A	N/A	a.181.1	Antibiotic binding domain of TipA-like multidrug resistance regulators
View	Download	0.459	N/A	N/A	f.14.1	Voltage-gated potassium channels
View	Download	0.459	N/A	N/A	a.46.1	Methionine synthase domain

Predicted Domain #2

Region A:
Residues: [78-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RTMAQSNSKQ RIALDMSFDD LMIEKDQKRT VQQIGWCYTA NRHSPDPFQF HVVGFDGPSR  60
   61 KIYDGNEHNL NQDIHLHQEK LENLFKPEEI VYLTSESENV LSDLDDTKVY VIGGIVDHNS 120
  121 QKGLCYRIAQ EKGFGHAKLP LDEHLLMKSR RVLTINQVYE ILVHYSVHKN WKDALLSIIP 180
  181 ERKNAQLKEE VVEEKPESLE EIGKLDTEST DTATGSPKIN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	76.113509
Match:	PF01746.12
Description:	No description for PF01746.12 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits