YRC Public Data Repository - Protein Structure Prediction

Protein:	rpl-25.2
Organism:	Caenorhabditis elegans
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpl-25.2.

Description	E-value	Query Range	Subject Range
gi\|50758228 - gi\|50758228\|ref\|XP_415820.1\| PREDICTED: similar to 60S ribosomal protein L23a [Gallus gallus]	247.0	[0..1]	[146..342]
gi\|76613395 - gi\|76613395\|ref\|XP_871507.1\| PREDICTED: similar to 60S ribosomal protein L23a [Bos taurus]	244.0	[0..20]	[146..240]
gi\|114669745, gi... - gi\|114669745\|ref\|XP_001142645.1\| PREDICTED: similar to Rpl23a protein isoform 3 [Pan troglodytes], g...	204.0	[0..1]	[146..1]
gi\|109466020, gi... - gi\|109466020\|ref\|XP_001073396.1\| PREDICTED: similar to 60S ribosomal protein L23a [Rattus norvegicus...	201.0	[0..18]	[146..28]
gi\|404015 - gi\|404015\|gb\|AAA03341.1\| ribosomal protein L23a	201.0	[0..18]	[146..28]
gi\|82951158, gi\|... - gi\|82951158\|ref\|XP_910397.1\| PREDICTED: similar to 60S ribosomal protein L23a [Mus musculus], gi\|148...	200.0	[0..19]	[146..29]
gi\|109113784 - gi\|109113784\|ref\|XP_001109660.1\| PREDICTED: similar to 60S ribosomal protein L23a isoform 1 [Macaca ...	200.0	[0..21]	[146..31]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPSSNKVGK AIQAKKAVVK GSKTNVRKNV RTSVHFRRPK TLVTARAPRY ARKSAPARDK  60
   61 LDSFAVIKAP HTTESSMKKI EDHNTLVFIV DEKANKHHIK RAVHALYNVK AVKVNTLITP 120
  121 LQQKKAYVRL ASDYDALDVA NKIGFI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.30103
Match:	2go54
Description:	No description for 2go54 was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits