YRC Public Data Repository - Protein Structure Prediction

Protein:	nduf-6
Organism:	Caenorhabditis elegans
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nduf-6.

Description	E-value	Query Range	Subject Range
gi\|187023363, gi... - gi\|39580837\|emb\|CAE73098.1\| Hypothetical protein CBG20477 [Caenorhabditis briggsae], gi\|187023363\|em...	239.0	[0..1]	[140..1]
gi\|27372069 - gi\|27372069\|gb\|AAN87885.1\| NADH-ubiquinone oxidoreductase [Paracoccidioides brasiliensis] gi\|226281669 - gi\|226281669\|gb\|EEH37235.1\| NADH-ubiquinone oxidoreductase [Paracoccidioides brasiliensis Pb01]	159.0	[0..18]	[130..80]
LBSA_EMENI - Lactobacillus shifted protein OS=Emericella nidulans GN=lbsA PE=1 SV=1 LBSA_EMENI - Lactobacillus shifted protein OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRR...	158.0	[0..18]	[129..74]
NDUS6_PONPY - NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pongo pygmaeus GN=NDUFS6 PE=... NDUS6_PONAB - NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pongo abelii GN=NDUFS6 PE=2 ...	158.0	[0..36]	[127..33]
gi\|119182827, gi... - gi\|90301305\|gb\|EAS30936.1\| hypothetical protein CIMG_06415 [Coccidioides immitis RS], gi\|119182827\|r...	157.0	[0..5]	[129..121]
gi\|82906344 - gi\|82906344\|ref\|XP_894909.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein 6 [M...	157.0	[0..37]	[127..26]
NDUS6_PANTR - NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pan troglodytes GN=NDUFS6 PE... NDUFS6 - NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)	156.0	[0..36]	[127..33]
gi\|46125063, gi\|... - gi\|46125063\|ref\|XP_387085.1\| hypothetical protein FG06909.1 [Gibberella zeae PH-1], gi\|42553655\|gb\|E...	156.0	[0..22]	[128..53]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRLLQQSVS RGPLAVRASS TITTKPPTPN QITKNNAQFD KVTHTGQAWD QSDYRLQRFD  60
   61 ISKKSVNPNV AMHLIDQRPP EDCGDKRVVF CDGGHPALGH PKVYINLDKP GVHACGYCGN 120
  121 RFYNSHATKA EDMKIQHLNC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.69897
Match:	2jvmA
Description:	No description for 2jvmA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits