YRC Public Data Repository - Protein Structure Prediction

Protein:	pfd-6
Organism:	Caenorhabditis elegans
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pfd-6.

Description	E-value	Query Range	Subject Range
gi\|89348180 - gi\|89348180\|gb\|ABD72216.1\| CTTNBP2 [Homo sapiens]	107.0	[0..1]	[126..115]
gi\|50511093 - gi\|50511093\|dbj\|BAD32532.1\| mKIAA1758 protein [Mus musculus]	105.0	[0..1]	[126..112]
CTTB2_CHLAE - Cortactin-binding protein 2 OS=Chlorocebus aethiops GN=CTTNBP2 PE=3 SV=1	104.0	[0..1]	[126..115]
CTTB2_GORGO - Cortactin-binding protein 2 OS=Gorilla gorilla gorilla GN=CTTNBP2 PE=3 SV=1	104.0	[0..1]	[126..115]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADMAKFEEE VNKLRTLEKD REKYFTSRQE MEMRLTESKN VKAELDLMES DSKVYKLIGA  60
   61 VLVRQDLEEA RSTVEKRLEF IDSETKRVEA SISDISKKCT EQRDKVMNMQ KSFQMMAQAA 120
  121 AQAQKK

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Detection Method:	PSI-BLAST
Confidence:	4.522879
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits