YRC Public Data Repository - Protein Structure Prediction

Protein:	abcf-1
Organism:	Caenorhabditis elegans
Length:	622 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for abcf-1.

Description	E-value	Query Range	Subject Range
gi\|108812648, gi... - gi\|108812648\|ref\|YP_648415.1\| ABC transporter ATP-binding protein [Yersinia pestis Nepal516], gi\|108... gi\|166207432, gi... - gi\|166211661\|ref\|ZP_02237696.1\| ABC transporter, ATP-binding protein [Yersinia pestis biovar Antiqua... gi\|22126556, gi\|... - gi\|22126556\|ref\|NP_669979.1\| ABC transporter ATP-binding protein [Yersinia pestis KIM], gi\|21959559\|... gi\|108806784, gi... - gi\|108806784\|ref\|YP_650700.1\| ABC transporter ATP-binding protein [Yersinia pestis Antiqua], gi\|1087... gi\|167421800, gi... - gi\|167421800\|ref\|ZP_02313553.1\| ABC transporter, ATP-binding protein [Yersinia pestis biovar Orienta... gi\|45436066, gi\|... - gi\|45441206\|ref\|NP_992745.1\| ABC transporter ATP-binding protein [Yersinia pestis biovar Microtus st... gi\|165939634, gi... - gi\|165939634\|ref\|ZP_02228178.1\| ABC transporter, ATP-binding protein [Yersinia pestis biovar Orienta... gi\|166012112, gi... - gi\|166012112\|ref\|ZP_02233010.1\| ABC transporter, ATP-binding protein [Yersinia pestis biovar Antiqua... gi\|162419791, gi... - gi\|162419791\|ref\|YP_001607368.1\| ABC transporter ATP-binding protein [Yersinia pestis Angola], gi\|16... gi\|165923540, gi... - gi\|165924480\|ref\|ZP_02220312.1\| ABC transporter, ATP-binding protein [Yersinia pestis biovar Orienta... gi\|145598768, gi... - gi\|145598768\|ref\|YP_001162844.1\| ABC transporter ATP-binding protein [Yersinia pestis Pestoides F], ... gi\|167057191, gi... - gi\|167424342\|ref\|ZP_02316095.1\| ABC transporter, ATP-binding protein [Yersinia pestis biovar Mediaev...	470.0	[0..79]	[610..57]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDAGKKISR KEAKKAKAKE NYDKTILSMG GVVENLPEVE GDQEEHGGIG SGAELGAHFT  60
   61 VSQLSKTGTQ LAQMENS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [78-384]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIKIENFDI SAQGKLLFDK ASLTIVYGRR YGLVGPNGMG KTTLLKHIGA RKLAIPSHID  60
   61 LLYCEQEIQV DSTSAIDTVV KSDKKRLALL EEEAKLMSEI EEGKTEAAER MKEVADELRD 120
  121 IGADSAEPRA RRILAGLGFS KEMQEKPCTD FSGGWRMRIS LARALFLEPT LLMLDEPTNH 180
  181 LDLNAVIWLD NYLQTWKKTL LIVSHDQGFL DSVCTDIIHL DNQKLHTYRG NYTLFKKQYA 240
  241 QDMQVHEKNF DQQQKQLKAM KKEGKSAKQA EEQVKQQMAN KAKKGGKKNA GKVNDDDDAG 300
  301 APELLQR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.69897
Match:	2iw3A
Description:	No description for 2iw3A was found.

Predicted Domain #3

Region A:
Residues: [385-622]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKEYSVKFQF PETTKLNPPV LGLHDVNFGY GKDVLFKKLN FGVDMDSRIA IVGPNGVGKS  60
   61 TLLKLLIGKI DPNDGELRKH RTLRIGWFDQ HANEALNGEQ TPVEFLCTKF NIDYQEARKQ 120
  121 LGTTGLAAHA HTVKIKDLSG GQKSRVALCN LALGGPDIII LDEPTNNLDI ESIDALAEAI 180
  181 RDFNGGVVMV THDERLVVRT DCNLWVVENQ GIDEIDGDFE DYKKEVLDAL GEALVSKK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	5.18
Match:	2ihyA
Description:	No description for 2ihyA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits