YRC Public Data Repository - Protein Structure Prediction

Protein:	CE05640
Organism:	Caenorhabditis elegans
Length:	198 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE05640.

Description	E-value	Query Range	Subject Range
gi\|157763296 - gi\|157763296\|ref\|XP_001673990.1\| Hypothetical protein CBG09611 [Caenorhabditis briggsae AF16] gi\|39593347, gi\|... - gi\|39593347\|emb\|CAE64817.1\| Hypothetical protein CBG09611 [Caenorhabditis briggsae], gi\|187031699\|em...	242.0	[0..3]	[198..1]
gi\|197245971, gi... - gi\|34851573\|ref\|XP_341669.1\| PREDICTED: similar to Anaphase-promoting complex subunit 10 (APC10) (Cy... APC10_MOUSE - Anaphase-promoting complex subunit 10 OS=Mus musculus GN=Anapc10 PE=1 SV=1 tr\|G3H9G3\|G3H9G3... - Anaphase-promoting complex subunit 10 OS=Cricetulus griseus GN=H671_3g9712 PE=3 SV=1	223.0	[0..1]	[161..1]
APC10_ARATH - Anaphase-promoting complex subunit 10 OS=Arabidopsis thaliana GN=APC10 PE=1 SV=2	223.0	[0..7]	[175..12]
gi\|149698187 - gi\|149698187\|ref\|XP_001502007.1\| PREDICTED: similar to anaphase promoting complex subunit 10 [Equus ... ANAPC10 - anaphase promoting complex subunit 10 gi\|57096819 - gi\|57096819\|ref\|XP_532678.1\| PREDICTED: similar to Anaphase promoting complex subunit 10 (APC10) (Cy... tr\|F2Z4G9\|F2Z4G9... - Isoform of Q2YDH1, Anaphase-promoting complex subunit 10 OS=Bos taurus GN=ANAPC10 PE=3 SV=1 gi\|109075785, gi... - gi\|109075787\|ref\|XP_001094665.1\| PREDICTED: anaphase promoting complex subunit 10 isoform 4 [Macaca ... ENSPTRT00000030634 - null ENSCJAT00000005096 - null	223.0	[0..1]	[161..1]
gi\|58702062, gi\|... - gi\|58702062\|gb\|AAH90191.1\| MGC85037 protein [Xenopus laevis], gi\|147899801\|ref\|NP_001089271.1\| hypot...	222.0	[0..1]	[161..1]
gi\|213627011, gi... - gi\|89273769\|emb\|CAJ82095.1\| anaphase promoting complex subunit 10 [Xenopus tropicalis], gi\|62858451\|...	222.0	[0..1]	[161..1]
gi\|4836700 - gi\|4836700\|gb\|AAD30527.1\| anaphase promoting complex subunit 10 [Homo sapiens]	222.0	[0..1]	[161..1]
APC10_BOVIN - Anaphase-promoting complex subunit 10 OS=Bos taurus GN=ANAPC10 PE=2 SV=1	222.0	[0..1]	[161..1]

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Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEEERTSSR GWMREFKYPS NLRDITEEAR ISLSSVAHFD ELLHESSELA WRTNMSPPHR  60
   61 ALFTFSKKTD ISYVMLFLDY SRDESYCPQE VRIDLGDGTN DWWLKMYRRV DQPKGWVKIP 120
  121 IHDAFGNPLR VMSLQMTIMK NHEKGRDCVV RHFRVLGPFR SRYDSMNRMI LGPSAVLEAR 180
  181 PGTEPIKDAI MNHYQSMR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.69897
Match:	1jhjA
Description:	APC10/DOC1 subunit of the anaphase-promoting complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.541348497910261	bayes_pls_golite062009
protein binding	0.162674024132104	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: