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View Structure Prediction Details

Protein: col-12
Organism: Caenorhabditis elegans
Length: 316 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-12.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
274.0 [0..46] [314..1458]

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Predicted Domain #1
Region A:
Residues: [1-316]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEDPKQIAQ ETESLRKVAF FGIAVSTIAT LTAIIAVPML YNYMQHVQSS LQSEVEFCQH  60
   61 RSNGLWDEYK RFQGVSGVEG RIKRDAYHRS LGVSGASRKA RRQSYGNDAA VGGFGGSSGG 120
  121 SCCSCGSGAA GPAGSPGQDG APGNDGAPGA PGNPGQDASE DQTAGPDSFC FDCPAGPPGP 180
  181 SGAPGQKGPS GAPGAPGQSG GAALPGPPGP AGPPGPAGQP GSNGNAGAPG APGQVVDVPG 240
  241 TPGPAGPPGS PGPAGAPGQP GQAGSSQPGG PGPQGDAGAP GAPGAPGQAG APGQDGESGS 300
  301 EGACDHCPPP RTAPGY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.39794
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle