YRC Public Data Repository - Protein Structure Prediction

Protein:	col-130
Organism:	Caenorhabditis elegans
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-130.

Description	E-value	Query Range	Subject Range
gi\|113461768, gi... - gi\|113461768\|ref\|YP_719837.1\| large adhesin [Haemophilus somnus 129PT], gi\|112823811\|gb\|ABI25900.1\| ...	256.0	[0..24]	[297..1497]
gi\|91083753 - gi\|91083753\|ref\|XP_971465.1\| PREDICTED: similar to Tubulin tyrosine ligase-like protein 2 (Testis-sp...	210.0	[0..39]	[298..345]
gi\|114584077 - gi\|114584077\|ref\|XP_001153230.1\| PREDICTED: alpha 3 type VI collagen isoform 1 [Pan troglodytes]	199.0	[0..21]	[297..1861]
CO6A1_CHICK - Collagen alpha-1(VI) chain OS=Gallus gallus GN=COL6A1 PE=2 SV=1	177.0	[0..34]	[298..267]
CO6A2_MOUSE - Collagen alpha-2(VI) chain OS=Mus musculus GN=Col6a2 PE=1 SV=3	173.0	[0..36]	[296..243]
gi\|25395729 - gi\|25395729\|pir\|\|H88449 protein F54D8.1 [imported] - Caenorhabditis elegans	158.0	[0..42]	[278..869]
gi\|115527070 - gi\|115527070\|ref\|NP_478055.2\| alpha 2 type VI collagen isoform 2C2a' precursor [Homo sapiens] h0016775 - null	155.0	[0..36]	[296..228]
gi\|39592976, gi\|... - gi\|39592976\|emb\|CAE62590.1\| Hypothetical protein CBG06704 [Caenorhabditis briggsae], gi\|187034250\|em...	151.0	[0..1]	[284..200]

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Predicted Domain #1

Region A:
Residues: [1-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKYVVTIA SCFSGLAIVA CLFTVGAIFK DINDLYDNVM DDMDEFKMFA NNAWKDMIPV  60
   61 TRPSLDNQSN LRAIFGREKR QAGQCNCGAQ PNNCPPGPPG PPGAPGAPGD DGHAGEAGKT 120
  121 GINGISLISH EGESGCIKCP AGEAGPAGPD GAPGAPGPDG QPGQDGPAGQ PGAPGPAGPE 180
  181 GDAGAPGDAG APGAPGAPGQ DGQRGTGLPG APGAPGPQGP SGNPGQDGAA GAPGQAGPAG 240
  241 PAGPDGQPGQ AGQDGEAGPE GNAGQPGADA AYCPCPARTG AVENKPETSG YRRRVSKVV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.69897
Match:	1y0fB
Description:	No description for 1y0fB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits