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View Structure Prediction Details

Protein: sgn-1
Organism: Caenorhabditis elegans
Length: 334 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sgn-1.

Description E-value Query
Range
Subject
Range
gi|157750896 - gi|157750896|ref|XP_001679160.1| Hypothetical protein CBG03169 [Caenorhabditis briggsae AF16]
gi|39597503, gi|... - gi|39597503|emb|CAE59733.1| Hypothetical protein CBG03169 [Caenorhabditis briggsae], gi|187036817|em...
414.0 [0..1] [334..1]

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Predicted Domain #1
Region A:
Residues: [1-244]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGYPVYAMG PTDEPVWSRN EQSLSRGVSH QTMVQPISSA YPTSYSHSQA YPSQTTVIHS  60
   61 TTKPVADADI YRVGIYGWRK RFLYTFILIL AIGIVLNLSL TFWIMSVLDF SPDGIGTLKI 120
  121 EDDGIRVEGR AQFDRPVHFS QLSTLDEETL TVDSFRGVNL QARKPNGDVA SKFSLMPEGK 180
  181 AQMTCDRFEV FDEDQKLLFF ADSDEIGLKL ENLRILEDGG SVFEGAIQTS SVRPQPDSPL 240
  241 RLES

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [245-334]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTRSVSVDAA QDIEILAAAG EVSVNSLLDI SISSKQGEIR LESSSIYMEK LARSDGRGSP  60
   61 QTQVCVCHNG RLFLAAPNAD CRADRDICSN 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle