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View Structure Prediction Details

Protein: srs-2
Organism: Caenorhabditis elegans
Length: 487 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for srs-2.

Description E-value Query
Range
Subject
Range
gi|251816747, gi... - gi|253752458|ref|YP_003025599.1| seryl-tRNA synthetase [Streptococcus suis SC84], gi|251816747|emb|C...
gi|56684577 - gi|56684577|gb|AAW21989.1| SerS [Streptococcus suis]
gi|251820530, gi... - gi|253754284|ref|YP_003027425.1| seryl-tRNA synthetase [Streptococcus suis P1/7], gi|251820530|emb|C...
413.0 [0..2] [466..1]

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Predicted Domain #1
Region A:
Residues: [1-487]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLDIDMFRT EKGGNPEIIR KSQQDRFKDP KLVDEVIELD EKWRKERFVA DQLNRQKNAI  60
   61 SKAIGEKMKK KEPQGTDDSV ADDIVARLAE LKIDELSQLT VVQLKKLRVL VDEKSVQTAA 120
  121 AVIANENARH EKLIQIGNLI HSSVVVSKDE ANNKIERTFG DLSTKKKYSH VDLVVMVDGF 180
  181 DGERGTVVAG GRGYFLKGPL VFLEQAIIQL ALQRLNVKGY VPLYTPFFMR KEVMQEVAQL 240
  241 SQFDDELYKV SSKGSEIAGD TSVDEKYLIA TSEQPIAAYH RNEWIKETEL PIKYAGVSTC 300
  301 FRQEVGSHGR DTRGIFRVHQ FEKIEQFVLC SPNDNESWTL FDEMIGNAES YYQELQIPYQ 360
  361 VVNIVSGELN NAAAKKFDLE AWFPGSGAYR ELVSCSNCLD YQSRRLKVRY GQTKKLSGEV 420
  421 PFVHMLNATM CATTRVICAI LENNQTEEGI NVPTAIQQWM PENYRTFIPF VKPAPIDEDA 480
  481 KKATGKK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 93.69897
Match: 2dq0A
Description: No description for 2dq0A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle