YRC Public Data Repository - Protein Structure Prediction

Protein:	col-132
Organism:	Caenorhabditis elegans
Length:	276 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-132.

Description	E-value	Query Range	Subject Range
gi\|113461768, gi... - gi\|113461768\|ref\|YP_719837.1\| large adhesin [Haemophilus somnus 129PT], gi\|112823811\|gb\|ABI25900.1\| ...	227.0	[0..37]	[274..1506]
gi\|114584077 - gi\|114584077\|ref\|XP_001153230.1\| PREDICTED: alpha 3 type VI collagen isoform 1 [Pan troglodytes]	175.0	[0..38]	[275..1925]
CO6A1_CHICK - Collagen alpha-1(VI) chain OS=Gallus gallus GN=COL6A1 PE=2 SV=1	159.0	[0..37]	[275..266]
h0016774 - null COL6A2 - collagen, type VI, alpha 2	154.0	[0..39]	[275..254]
CO6A2_MOUSE - Collagen alpha-2(VI) chain OS=Mus musculus GN=Col6a2 PE=1 SV=3	152.0	[0..39]	[275..269]
gi\|25395729 - gi\|25395729\|pir\|\|H88449 protein F54D8.1 [imported] - Caenorhabditis elegans	149.0	[0..38]	[270..873]
gi\|39592976, gi\|... - gi\|39592976\|emb\|CAE62590.1\| Hypothetical protein CBG06704 [Caenorhabditis briggsae], gi\|187034250\|em...	148.0	[0..2]	[275..202]

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Predicted Domain #1

Region A:
Residues: [1-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNNFICAAV SVSSILVVGY ITAGLLIFAD FRTFYSTALD DVAEFNKFAT EAWDDMIEIN  60
   61 RSVVRQKRSG ESKCGCMNKV NNCPPGPAGP PGEPGAPGDD GWNGDAGQPG PDFPLFDQSL 120
  121 IYQRPPCIRC PVGEPGPPGP DGEPGEQGPP GPPGVDNFEV GHDGPPGVEG EPGDAGDQGE 180
  181 DGEPGVDGRP GASGIREIGM PGAPGAPGVA GAEGLPGKDG EPGIPGPEGE EGPPGAAGLD 240
  241 GERGDEGEPG PEGPPGIPGP DAAYCSCPLR SARLVF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.154902
Match:	1y0fB
Description:	No description for 1y0fB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits