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View Structure Prediction Details

Protein: scl-8
Organism: Caenorhabditis elegans
Length: 210 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for scl-8.

Description E-value Query
Range
Subject
Range
scl-12 - status:Partially_confirmed UniProt:Q9N5N3 protein_id:AAF39874.1
234.0 [0..1] [209..1]
gi|187037878, gi... - gi|39587736|emb|CAE58674.1| Hypothetical protein CBG01847 [Caenorhabditis briggsae], gi|187037878|em...
gi|157757501 - gi|157757501|ref|XP_001671094.1| Hypothetical protein CBG01847 [Caenorhabditis briggsae AF16]
233.0 [0..1] [209..1]

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Predicted Domain #1
Region A:
Residues: [1-210]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTLLVLAVA CVGVYAQFSE GGKQSILNAH NDIRSRIAKG NYVAKGNRKE SATNMLKMKW  60
   61 DSSLEQSAQN YANGCHMQHS TNDKTIGENL YWEWSGDPFS DLDKFGKIAT VAWDHEFEQF 120
  121 GWNSNKFSLA LFNTGVAHAT QIAWAPTGKI GCGVKNCGRD ARRGGLFQVA IVCQYRVRGN 180
  181 FFFKNIYNSG ATCSACPAGT SCEQSTGLCA 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.0
Match: 1u53A
Description: Novel X-Ray Structure of Na-ASP-2, a PR-1 protein from the nematode parasite Necator americanus and a vaccine antigen for human hookworm infection
Matching Structure (courtesy of the PDB):

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