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View Structure Prediction Details

Protein: col-131
Organism: Caenorhabditis elegans
Length: 308 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-131.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
290.0 [0..37] [308..1507]

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Predicted Domain #1
Region A:
Residues: [1-308]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSEILVIGT SLFVFLSVLV FVLQTKNDLD QVWAEFDQEV QEVTVLREAS WNTLRNLATA  60
   61 KKIPIERSKR QSYYEKVADS YALPPSLGVE AHAPSISPEC NCNLENNNCP AGPSGPKGLP 120
  121 GQDGAPGEPG PAGKMGQNTG DVQTMHVDPG CQYCPAGEMG PPGAPGKIGP RGQRGQSGGA 180
  181 GTPGNNGAPG HNGELGPCGQ AGPPGPAGAI GRRGMDTVRE KGVRGPIGAP GPVGPVGMEG 240
  241 DRGNRGGLGV DGPLGSIGLQ GPPGRTGSTG DVGESGPIGP NGQDALYCPC PKRVADGAGG 300
  301 GVYQPYKQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.39794
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle