| Protein: | pal-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 268 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pal-1.
| Description | E-value | Query Range |
Subject Range |
|
|
135.0 | [0..1] | [268..1] |
|
|
135.0 | [0..59] | [265..1] |
|
|
130.0 | [0..202] | [268..4] |
|
|
130.0 | [0..194] | [268..1] |
|
|
129.0 | [0..203] | [268..10] |
|
|
129.0 | [0..68] | [265..13] |
|
|
128.0 | [0..83] | [267..158] |
|
|
128.0 | [0..202] | [266..1] |
|
Region A: Residues: [1-191] |
1 11 21 31 41 51
| | | | | |
1 MSVDVKSDFS ENESSSTPSP TTVPADVTWP HYPMMPFMQP HPLREKMLQP TFDPQIYGRW 60
61 SQMGDTGFYG HPDLYPFGLP QLAANGQIPA VEAVDVKPPL SNGSSSSDSG MYPSPSDMMT 120
121 PFPSTSSGAA SSSELSAAAA AAANYQMRAA TCYQQSVWPF MDYQQGFSWK MPLGNNHGKD 180
181 RRSSSDGKTL P
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [192-268] |
1 11 21 31 41 51
| | | | | |
1 TGPGTNNVRV RTADKYRMVY SDYQRLELEK EFHTSPFITS DRKSQLSTML SLTERQIKIW 60
61 FQNRRAKDRR DKQKIRL
|
| Detection Method: | |
| Confidence: | 28.221849 |
| Match: | 1pufA |
| Description: | Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 2.89825020286436 | bayes_pls_golite062009 |
