YRC Public Data Repository - Protein Structure Prediction

Protein:	CE05382
Organism:	Caenorhabditis elegans
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE05382.

Description	E-value	Query Range	Subject Range
gi\|39580058, gi\|... - gi\|39580058\|emb\|CAE74551.1\| Hypothetical protein CBG22307 [Caenorhabditis briggsae], gi\|187021902\|em...	134.0	[0..53]	[159..36]
flp-9 - status:Confirmed UniProt:Q18502 protein_id:CAA93480.2	133.0	[0..58]	[159..1]
gi\|13274115 - gi\|13274115\|emb\|CAC33830.1\| FMRFamide-related peptide [Globodera pallida]	100.0	[0..73]	[159..45]
gi\|33621239 - gi\|33621239\|gb\|AAQ23187.1\| FMRFamide-related peptide FLP-6 precursor [Ascaris suum]	97.0	[0..58]	[159..9]
gi\|29825513 - gi\|29825513\|gb\|AAO92291.1\| FMRFamide-related peptide precursor [Heterodera glycines]	97.0	[0..74]	[159..62]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCVYVCAQTP PIRVLSILSQ DSAPIKAHFF FWSRFQRKTQ QHRLKKGETF FVSKKKKMNQ  60
   61 FYALFLVACI AAMANAYEEP DLDALAEFCG KESNRKYCDQ IAQLATQHAI GINQEQVRME 120
  121 KRKPSFVRFG KRSGYPLVID DEEMRMDKRK PSFVRFGRK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits