YRC Public Data Repository - Protein Structure Prediction

Protein:	CE05347
Organism:	Caenorhabditis elegans
Length:	150 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE05347.

Description	E-value	Query Range	Subject Range
gi\|157757371 - gi\|157757371\|ref\|XP_001671029.1\| Hypothetical protein CBG20020 [Caenorhabditis briggsae AF16] gi\|187023794, gi... - gi\|39588418\|emb\|CAE72769.1\| Hypothetical protein CBG20020 [Caenorhabditis briggsae], gi\|187023794\|em...	244.0	[0..1]	[150..1]
NDUA5_BOVIN - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Bos taurus GN=NDUFA5 PE=1 SV=3	183.0	[0..40]	[150..6]
gi\|12844560 - gi\|12844560\|dbj\|BAB26409.1\| unnamed protein product [Mus musculus]	183.0	[0..40]	[150..6]
gi\|57095956 - gi\|57095956\|ref\|XP_532446.1\| PREDICTED: similar to NADH-ubiquinone oxidoreductase 13 kDa-B subunit (...	181.0	[0..40]	[150..6]
NDUA5_RAT - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Rattus norvegicus GN=Ndufa5 PE=1 SV=...	180.0	[0..40]	[150..6]
NDUA5_MACFA - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Macaca fascicularis GN=NDUFA5 PE=3 S...	179.0	[0..40]	[150..6]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRFLRTAV ARATQQRSMY ENPYINRFKA RSKVSEDFHK KTTGITGLFV NEHPHRALTV  60
   61 VYGRILRALE QIPRDAAYRK YTEAVVKQRL ALVQAENDIK KLEEKIGMGQ IEEVIEQAEY 120
  121 ELETTRAIVD SKAWEPLVES APKGQWSWPV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	36.05061
Match:	PF04716.5
Description:	No description for PF04716.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits