YRC Public Data Repository - Protein Structure Prediction

Protein:	CE05296
Organism:	Caenorhabditis elegans
Length:	103 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE05296.

Description	E-value	Query Range	Subject Range
gi\|39597539, gi\|... - gi\|39597539\|emb\|CAE59769.1\| Hypothetical protein CBG03221 [Caenorhabditis briggsae], gi\|187036781\|em... gi\|157750824 - gi\|157750824\|ref\|XP_001679124.1\| Hypothetical protein CBG03221 [Caenorhabditis briggsae AF16]	160.0	[0..1]	[103..1]
AGAP012374-PA - NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3\|protein_coding\|3L:41232911:41233246:-1\|gene:AGAP... gi\|55234281, gi\|... - gi\|58393590\|ref\|XP_320183.2\| AGAP012374-PA [Anopheles gambiae str. PEST], gi\|55234281\|gb\|EAA00203.3\|...	121.0	[0..2]	[88..4]
gi\|157115043, gi... - gi\|157115043\|ref\|XP_001652532.1\| NADH dehydrogenase, putative [Aedes aegypti], gi\|108877066\|gb\|EAT41...	120.0	[0..2]	[95..3]
gi\|194135142, gi... - gi\|195346495\|ref\|XP_002039793.1\| GM15849 [Drosophila sechellia], gi\|194135142\|gb\|EDW56658.1\| GM15849... CG10320-PD, CG10... - This gene is referred to in FlyBase by the symbol Dmel\CG10320 (CG10320, FBgn0034645). It is a prote...	117.0	[0..1]	[88..1]
gi\|194177603, gi... - gi\|38048277\|gb\|AAR10041.1\| similar to Drosophila melanogaster CG10320 [Drosophila yakuba], gi\|195486...	116.0	[0..1]	[88..1]
NDUB3_MOUSE - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 OS=Mus musculus GN=Ndufb3 PE=1 SV=1	114.0	[0..9]	[87..20]
gi\|125807359\|ref... - GA10242-PA [Drosophila pseudoobscura], GA10242 [Drosophila pseudoobscura pseudoobscura] gi\|54635548, gi\|... - gi\|54635548\|gb\|EAL24951.1\| GA10242 [Drosophila pseudoobscura pseudoobscura], gi\|125807359\|ref\|XP_001...	113.0	[0..1]	[87..1]
NDUB3_BOVIN - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 OS=Bos taurus GN=NDUFB3 PE=1 SV=2	113.0	[0..1]	[87..1]
gi\|40807102, gi\|... - gi\|47086471\|ref\|NP_997950.1\| hypothetical protein LOC338177 [Danio rerio], gi\|40807102\|gb\|AAH65328.1...	111.0	[0..1]	[89..1]

Back

Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGGHHEPFK IPNYSIYSNF RDFPQLAQHE KRLAQIGLKD PWIRNYVYLY DRKYPHVVGQ  60
   61 WAHFKKLILP GWKAGVAFTA ALIFVEEAYQ YKTHGTTSWD GHH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.909	a.24.17	Group V grass pollen allergen
View	Download	0.909	a.24.17	Group V grass pollen allergen
View	Download	0.598	a.188.1	Description not found.
View	Download	0.580	a.74.1	Cyclin-like
View	Download	0.580	a.74.1	Cyclin-like
View	Download	0.495	a.60.8	HRDC-like
View	Download	0.493	a.24.7	FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
View	Download	0.493	a.24.7	FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
View	Download	0.447	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits