YRC Public Data Repository - Protein Structure Prediction

Protein:	col-148
Organism:	Caenorhabditis elegans
Length:	295 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-148.

Description	E-value	Query Range	Subject Range
gi\|113461768, gi... - gi\|113461768\|ref\|YP_719837.1\| large adhesin [Haemophilus somnus 129PT], gi\|112823811\|gb\|ABI25900.1\| ...	228.0	[0..39]	[294..1473]
gi\|91083753 - gi\|91083753\|ref\|XP_971465.1\| PREDICTED: similar to Tubulin tyrosine ligase-like protein 2 (Testis-sp...	189.0	[0..37]	[293..361]
gi\|114584077 - gi\|114584077\|ref\|XP_001153230.1\| PREDICTED: alpha 3 type VI collagen isoform 1 [Pan troglodytes]	182.0	[0..49]	[283..1913]
CO6A1_CHICK - Collagen alpha-1(VI) chain OS=Gallus gallus GN=COL6A1 PE=2 SV=1	164.0	[0..35]	[294..265]
gi\|25395729 - gi\|25395729\|pir\|\|H88449 protein F54D8.1 [imported] - Caenorhabditis elegans	164.0	[0..49]	[288..867]
CO6A2_MOUSE - Collagen alpha-2(VI) chain OS=Mus musculus GN=Col6a2 PE=1 SV=3	151.0	[0..33]	[294..246]
gi\|157763364 - gi\|157763364\|ref\|XP_001674024.1\| Hypothetical protein CBG09576 [Caenorhabditis briggsae AF16] gi\|39593313, gi\|... - gi\|39593313\|emb\|CAE64783.1\| Hypothetical protein CBG09576 [Caenorhabditis briggsae], gi\|187031733\|em...	145.0	[0..1]	[289..1]
gi\|68399781 - gi\|68399781\|ref\|XP_696164.1\| PREDICTED: similar to alpha 2 type VI collagen isoform 2C2a precursor [...	142.0	[0..37]	[293..345]

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Predicted Domain #1

Region A:
Residues: [1-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFEEKLIVGI STAISALAVF GWFFVIPSLY NTISAIHDEV SSGVSLFRDE TDLAWTELMD  60
   61 VQISVSPPSY PRDHPFSSII RQKRQSFASL PEWCQCEPTK PICPPGPPGQ PGQQGQKGPP 120
  121 GVPGQRGQDC TIVYAPIICP PVSQECVKCP PGPVGAIGPM GPIGSMGRAG QPGYSGPRGN 180
  181 DGFPGLPGPP GENGQPGQSG KDGQPGRNGA DGKRGYGAPG APGAQGKPGP SGPPGIDGYP 240
  241 GQNGWKGQQG VPGQDDFPGT FGEPGAAGKQ GYPGLPGSDA SYCPCPNRSA NFHTK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.69897
Match:	1y0fA
Description:	No description for 1y0fA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits