YRC Public Data Repository - Protein Structure Prediction

Protein:	prx-1
Organism:	Caenorhabditis elegans
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for prx-1.

Description	E-value	Query Range	Subject Range
gi\|116665484, gi... - gi\|88952158\|ref\|ZP_01154630.1\| AAA ATPase, CDC48 [Methanosaeta thermophila PT], gi\|88928832\|gb\|EAR47...	242.0	[0..2]	[258..207]
gi\|48856042 - gi\|48856042\|ref\|ZP_00310200.1\| COG0465: ATP-dependent Zn proteases [Cytophaga hutchinsonii] gi\|110279714, gi... - gi\|110637033\|ref\|YP_677240.1\| cell division protein, ATP-dependent metalloprotease [Cytophaga hutchi...	241.0	[0..3]	[268..205]
FTSH3_SYMTH - ATP-dependent zinc metalloprotease FtsH 3 OS=Symbiobacterium thermophilum GN=ftsH3 PE=3 SV=1 FTSH3_SYMTH - ATP-dependent zinc metalloprotease FtsH 3 OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=...	241.0	[0..2]	[268..157]
gi\|86283151, gi\|... - gi\|86359049\|ref\|YP_470941.1\| cell division metalloproteinase protein [Rhizobium etli CFN 42], gi\|862...	241.0	[0..2]	[269..158]
gi\|114315948, gi... - gi\|114327774\|ref\|YP_744931.1\| cell division protein ftsH [Granulibacter bethesdensis CGDNIH1], gi\|11...	240.0	[0..2]	[267..157]
gi\|70606628, gi\|... - gi\|70606628\|ref\|YP_255498.1\| ATP-dependent Zn protease [Sulfolobus acidocaldarius DSM 639], gi\|68567...	239.0	[0..2]	[258..179]
SAV_SULAC - Protein SAV OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIM... SAV_SULAC - Protein SAV OS=Sulfolobus acidocaldarius GN=sav PE=3 SV=2	239.0	[0..2]	[258..212]
gi\|56474515, gi\|... - gi\|67484218\|ref\|XP_657329.1\| cell division cycle protein 48 [Entamoeba histolytica HM-1:IMSS], gi\|56...	239.0	[0..2]	[261..192]
gi\|15891238, gi\|... - gi\|15891238\|ref\|NP_356910.1\| hypothetical protein AGR_L_2253 [Agrobacterium tumefaciens str. C58], g... gi\|25308068 - pir\|\|E98271 metalloproteinase ftsH (AJ243808) [imported] - Agrobacterium tumefaciens (strain C58, Ce...	239.0	[0..2]	[269..172]
gi\|207742906, gi... - gi\|207742906\|ref\|YP_002259298.1\| atp-dependent zinc metallopeptidase (cell division protein ftsh) [R... gi\|83747762, gi\|... - gi\|83747762\|ref\|ZP_00944796.1\| Cell division protein ftsH [Ralstonia solanacearum UW551], gi\|8372553... gi\|207723996, gi... - gi\|207723996\|ref\|YP_002254394.1\| atp-dependent zinc metallopeptidase (cell division protein ftsh) [R...	239.0	[0..3]	[269..155]

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Predicted Domain #1

Region A:
Residues: [1-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDVGGMFEQ KKLLEQVIIW PRKYPQLFES VGVPVSKGIL LHGPSGCGKT LLANATISNS  60
   61 NFSVVNVKGP ELLSKYIGAS EENVRLVFEK ARSCAPCILF FDELDSLAPK RGHDSTGVTD 120
  121 RVVNQLLTEL DGAEGGMKGV IILGCTSRID LIDDALLRPG RFDHHVYCGH PEKTERLDIM 180
  181 KVLTNKLKPT DVDFECLAQK TDGWSGADLQ LLFTNAQFYN ARQIAKEEDG LEEDNVPIDQ 240
  241 ASIESVFNDS IPKPKRSQVD NRIGQKVTLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.221849
Match:	1oz4A
Description:	VCP/p97
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits