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View Structure Prediction Details

Protein: lips-2
Organism: Caenorhabditis elegans
Length: 335 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lips-2.

Description E-value Query
Range
Subject
Range
gi|157764940 - gi|157764940|ref|XP_001674813.1| Hypothetical protein CBG11593 [Caenorhabditis briggsae AF16]
gi|187030197, gi... - gi|39583367|emb|CAE66341.1| Hypothetical protein CBG11593 [Caenorhabditis briggsae], gi|187030197|em...
171.0 [0..1] [320..1]

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Predicted Domain #1
Region A:
Residues: [1-335]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPEIYVFIL SSYLYRCFAI VGPITEDFVQ YLKEVEHTNS GLLRHVKSFD HTGSFGGKSF  60
   61 PQEKVKHSPI VFIHGNSDSA LKYGNDQYQS GWDTVVQYFM DRGYTLAELY GISYGDRNMT 120
  121 QSVFRVFNCQ DLLLHRQLLL SVLVYTGARH IDIIAHSMGV SIARAIIQGG KFTSEKESCD 180
  181 LGSDFSSLIG TFIAISSANY GMCSCEAGTA FPACDKEVIR KINPLENQLE SKKSFLQTKY 240
  241 SKFLTKLNKV HKKEAEFIAS IWSKDDEVFL KGNLVWGKQT SLVPGSNIWK EYPQLTHMET 300
  301 KTETAADQFK IITSRSAPSA QTKKSYAKRK NWNFY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.522879
Match: 2r11A
Description: No description for 2r11A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle