YRC Public Data Repository - Protein Structure Prediction

Protein:	rpl-24.2
Organism:	Caenorhabditis elegans
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpl-24.2.

Description	E-value	Query Range	Subject Range
gi\|76660704 - gi\|76660704\|ref\|XP_585396.2\| PREDICTED: similar to ribosomal protein L24-like [Bos taurus]	203.0	[0..1]	[111..122]
gi\|82995895, gi\|... - gi\|82996540\|ref\|XP_916736.1\| PREDICTED: similar to ribosomal protein L24-like [Mus musculus], gi\|829...	198.0	[0..1]	[160..23]
gi\|15779001 - gi\|15779001\|gb\|AAH14576.1\| Ribosomal L24 domain containing 1 [Homo sapiens]	193.0	[0..1]	[160..1]
RLP24_PONPY - Probable ribosome biogenesis protein RLP24 - Pongo pygmaeus (Orangutan) RLP24_PONAB - Probable ribosome biogenesis protein RLP24 OS=Pongo abelii GN=RSL24D1 PE=2 SV=1	192.0	[0..1]	[160..1]
RLP24_RAT - Probable ribosome biogenesis protein RLP24 OS=Rattus norvegicus GN=Rsl24d1 PE=2 SV=1	191.0	[0..1]	[160..1]
gi\|74000755 - gi\|74000755\|ref\|XP_535488.2\| PREDICTED: similar to ribosomal protein L24-like [Canis familiaris]	190.0	[0..1]	[160..1]
gi\|147903743, gi... - gi\|27769143\|gb\|AAH42273.1\| MGC53444 protein [Xenopus laevis], gi\|147903743\|ref\|NP_001079441.1\| hypot...	190.0	[0..1]	[160..1]

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Predicted Domain #1

Region A:
Residues: [1-61]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIEKCYFCS SPIYPGHGIQ FVRNDSTVFK FCRSRCNKLF KKKKNPRKLR FTKAARRARG  60
   61 K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.39794
Match:	1ffkR
Description:	Ribosomal protein L24e
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [62-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELINDATQLL EQRRDEPVKY ERAMFQKTIE AAKTISALKT KRYGNLIRKR LQPGKIVQKK  60
   61 GLLAKVDKKM HLIRAPVANR DGVKTRAAAK EKKTAESMET N

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits