YRC Public Data Repository - Protein Structure Prediction

Protein:	CE05195
Organism:	Caenorhabditis elegans
Length:	262 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE05195.

Description	E-value	Query Range	Subject Range
gi\|187033467, gi... - gi\|39596443\|emb\|CAE63062.1\| Hypothetical protein CBG07340 [Caenorhabditis briggsae], gi\|187033467\|em... gi\|157772310 - gi\|157772310\|ref\|XP_001677975.1\| Hypothetical protein CBG07340 [Caenorhabditis briggsae AF16]	293.0	[0..14]	[260..736]
alg-1 - status:Confirmed UniProt:Q20578 protein_id:CAA93512.2	293.0	[0..14]	[260..714]
AGO2_XENTR - Protein argonaute-2 OS=Xenopus tropicalis GN=ago2 PE=2 SV=1	292.0	[0..14]	[256..583]
AGO2_XENLA - Protein argonaute-2 OS=Xenopus laevis GN=ago2 PE=2 SV=1	292.0	[0..14]	[256..574]
gi\|109087605 - gi\|109087605\|ref\|XP_001100725.1\| PREDICTED: similar to eukaryotic translation initiation factor 2C, ...	291.0	[0..14]	[256..765]
gi\|66792511 - gi\|66792511\|gb\|AAH96465.1\| Eif2c2 protein [Mus musculus]	290.0	[0..14]	[256..595]
gi\|73974781 - gi\|73974781\|ref\|XP_532338.2\| PREDICTED: similar to eukaryotic translation initiation factor 2C, 2 [C...	289.0	[0..14]	[256..611]
AGO2_RABIT - Protein argonaute-2 (Fragment) OS=Oryctolagus cuniculus GN=AGO2 PE=1 SV=2	289.0	[0..14]	[256..552]
gi\|50731932 - gi\|50731932\|ref\|XP_418421.1\| PREDICTED: similar to eukaryotic translation initiation factor 2C, 2; a...	289.0	[0..14]	[256..562]

Back

Predicted Domain #1

Region A:
Residues: [1-262]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALRRRRHVA PDIRNNAHQY MRSLRGPETN TLFIGYAINH GTVDPSTPGV YNNPSTVVFT  60
   61 FNGTSCPDHF TEYFHFQKAT IPHVDPALIR RVTRWIIEDF RSHREVLPDF IIVLRDQVRD 120
  121 DLQSTVEHQE FTAFKEEIST YIETASNLPE WNPRFAFGLA PWRPENTEPL VYLFQDDGIF 180
  181 QSNEEFQNLI VNMFITIRVR NHRFSLLEPL WNAENKAGLW TKFFPSYAAF REAHNNALPR 240
  241 IANSSQYDFD TISLQLHIDP EV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.22
Match:	1w9hA
Description:	The Structure of a Piwi protein from Archaeoglobus fulgidus.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits